Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   VDS57_RS13765 Genome accession   NZ_CP141839
Coordinates   2587803..2588933 (+) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2582803..2593933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS13735 (VDS57_13735) - 2582851..2582952 (-) 102 Protein_2648 hypothetical protein -
  VDS57_RS13740 (VDS57_13740) - 2583171..2583466 (-) 296 Protein_2649 hypothetical protein -
  VDS57_RS13745 (VDS57_13745) yezA 2583533..2583739 (-) 207 WP_041056936.1 bacteriocin immunity protein -
  VDS57_RS13750 (VDS57_13750) atxF 2583972..2584427 (-) 456 WP_213383044.1 TIGR01741 family protein -
  VDS57_RS13755 (VDS57_13755) yeeF 2584447..2586456 (-) 2010 WP_324271363.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  VDS57_RS13760 (VDS57_13760) - 2586636..2587658 (+) 1023 WP_324271362.1 hypothetical protein -
  VDS57_RS13765 (VDS57_13765) rapC 2587803..2588933 (+) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  VDS57_RS13770 (VDS57_13770) phrH 2588923..2589096 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  VDS57_RS13775 (VDS57_13775) yeeI 2589256..2589975 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  VDS57_RS13780 (VDS57_13780) - 2590109..2590603 (+) 495 WP_324271361.1 spore coat protein -
  VDS57_RS13785 (VDS57_13785) yezE 2590720..2591304 (+) 585 WP_015252623.1 TetR/AcrR family transcriptional regulator -
  VDS57_RS13790 (VDS57_13790) yesE 2591383..2591826 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  VDS57_RS13795 (VDS57_13795) yesF 2591823..2592691 (+) 869 Protein_2660 NAD-dependent epimerase/dehydratase family protein -
  VDS57_RS13800 (VDS57_13800) cotJA 2592817..2593065 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  VDS57_RS13805 (VDS57_13805) cotJB 2593049..2593312 (+) 264 WP_003219491.1 spore coat protein CotJB -
  VDS57_RS13810 (VDS57_13810) cotJC 2593327..2593896 (+) 570 WP_014479096.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=838357 VDS57_RS13765 WP_014479091.1 2587803..2588933(+) (rapC) [Bacillus subtilis strain PN1236]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=838357 VDS57_RS13765 WP_014479091.1 2587803..2588933(+) (rapC) [Bacillus subtilis strain PN1236]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402