Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ALDI51_RS21635 Genome accession   NZ_AP024172
Coordinates   4584889..4586442 (-) Length   517 a.a.
NCBI ID   WP_201396505.1    Uniprot ID   -
Organism   Alicycliphilus denitrificans strain I51     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4579889..4591442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALDI51_RS21615 (ALDI51_42770) - 4580751..4581236 (-) 486 WP_013520823.1 putative toxin-antitoxin system toxin component, PIN family -
  ALDI51_RS21620 (ALDI51_42780) - 4581226..4582494 (-) 1269 WP_201396503.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  ALDI51_RS21625 (ALDI51_42790) - 4582607..4584430 (+) 1824 WP_201396504.1 methyl-accepting chemotaxis protein -
  ALDI51_RS21630 (ALDI51_42800) - 4584432..4584875 (-) 444 WP_013520826.1 acyl-CoA thioesterase -
  ALDI51_RS21635 (ALDI51_42810) rpoN/rpoN1 4584889..4586442 (-) 1554 WP_201396505.1 RNA polymerase factor sigma-54 Machinery gene
  ALDI51_RS21640 (ALDI51_42820) lptB 4586492..4587292 (-) 801 WP_013520828.1 LPS export ABC transporter ATP-binding protein -
  ALDI51_RS21645 (ALDI51_42830) lptA 4587289..4587933 (-) 645 WP_013520829.1 lipopolysaccharide transport periplasmic protein LptA -
  ALDI51_RS21650 (ALDI51_42840) - 4588053..4588709 (-) 657 WP_013520830.1 thiol:disulfide interchange protein DsbA/DsbL -
  ALDI51_RS21655 (ALDI51_42850) - 4588789..4589424 (-) 636 WP_013520831.1 SPOR domain-containing protein -
  ALDI51_RS21660 (ALDI51_42860) argS 4589437..4591140 (-) 1704 WP_201396506.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 56198.11 Da        Isoelectric Point: 4.5259

>NTDB_id=83835 ALDI51_RS21635 WP_201396505.1 4584889..4586442(-) (rpoN/rpoN1) [Alicycliphilus denitrificans strain I51]
MKPSLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDENPFLERTVDDASLDEPLAPPAGEGGRQADDATSSGAA
DADWTGDEGQNDAQMPDIAAPTDWDGDTDIPGDDREWGSDAPASAGSGSGDGDEADAADLAHGHESLADHLERQALALRL
SELDMAALRFLIGSLNDDGYLDEPLESLAASLADTDDPEQLDELVHRLTVALRLLQSLDPAGVGARGLAECLALQLQALD
REEEGDPEVIQAALCICRQPLDLLARRDVRRLAQACAASDDLTRAAMALIARLEPRPGRRFADVERNVIVPDVIVRKIGR
GAQQSFSVRLNPDVMPRLRVHDVYANALRGGSKGDGHQALQARLQEARWFIKNIQQRFDTILRVSSAIVERQKNFFVHGE
LAMRPLVLREIADELGLHESTISRVTTAKYMATPQGTFELKYFFGSGLGTETGGSASSTAVRALIRQFVAAEDPHKPLSD
GQIADMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=83835 ALDI51_RS21635 WP_201396505.1 4584889..4586442(-) (rpoN/rpoN1) [Alicycliphilus denitrificans strain I51]
ATGAAGCCCAGCCTGTCGCTGCGCGTCTCGCAGCACCTGGCGCTCACGCCGCAGCTGCAGCAGTCCATCCGCCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAGGTCGAGCAGATGCTCGACGAGAACCCCTTCCTGGAGCGCACGGTGGACGACG
CGTCGCTGGACGAGCCGCTCGCGCCCCCCGCGGGCGAGGGCGGCCGCCAGGCCGACGATGCTACTTCTTCAGGAGCTGCC
GATGCAGACTGGACGGGCGATGAGGGCCAAAACGATGCTCAAATGCCCGATATCGCCGCTCCCACCGACTGGGACGGCGA
CACCGACATACCGGGCGACGACCGCGAGTGGGGCAGCGATGCGCCCGCAAGCGCCGGCAGCGGCTCTGGCGATGGCGACG
AGGCCGACGCCGCGGACCTGGCGCACGGCCACGAATCGCTCGCAGACCACCTTGAGCGCCAGGCCCTGGCGCTGCGCCTG
TCCGAGCTGGATATGGCGGCGCTGCGCTTTCTCATCGGCTCGCTCAACGACGACGGCTATCTGGACGAGCCGCTCGAATC
CCTGGCCGCGAGCCTGGCGGACACGGACGACCCCGAGCAGCTCGATGAGCTGGTGCACCGCCTGACCGTGGCTCTGCGCC
TGCTGCAGAGCCTGGACCCCGCGGGCGTGGGCGCGCGCGGCCTGGCCGAATGCCTGGCGTTGCAGCTGCAGGCGCTGGAC
CGGGAGGAGGAGGGCGACCCCGAGGTGATCCAGGCCGCGCTGTGCATCTGCCGCCAGCCGCTCGACCTGCTGGCGCGGCG
CGACGTGCGCCGCCTGGCCCAGGCCTGCGCCGCGAGCGACGACCTCACGCGCGCCGCCATGGCGCTGATCGCGCGGCTGG
AGCCGCGCCCCGGGCGGCGCTTCGCCGACGTGGAGCGCAACGTCATCGTGCCCGACGTGATCGTCAGGAAGATCGGGCGC
GGCGCGCAGCAGAGCTTCAGCGTCCGCCTCAACCCCGACGTGATGCCGCGCCTGCGCGTGCACGACGTCTACGCCAACGC
CCTGCGCGGCGGCAGCAAGGGCGACGGCCACCAGGCGCTGCAGGCCAGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACA
TACAGCAGCGCTTCGACACCATCCTGCGCGTGTCCAGCGCCATCGTGGAGCGGCAGAAGAACTTCTTCGTGCATGGCGAG
CTGGCCATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAGCTCGGCCTGCACGAATCCACCATCAGCCGCGTGACCAC
GGCCAAGTACATGGCCACGCCCCAGGGCACGTTCGAGCTCAAGTACTTCTTCGGCTCGGGCCTGGGCACCGAGACCGGCG
GCAGCGCGTCGAGCACGGCGGTGCGCGCGCTCATCCGGCAGTTCGTCGCCGCCGAGGATCCGCACAAGCCGCTGTCGGAC
GGCCAGATCGCCGACATGCTCAAGGAGCAGGGCATAGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGAGAGGCGCTGAA
GATCGCGCCCGCCAACCTGCGCAAGGCGCTATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(139-344)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(359-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.23

100

0.544

Multiple sequence alignment