Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QPL83_RS01845 Genome accession   NZ_CP126524
Coordinates   40447..40731 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus toyonensis strain Monterrey_S3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35447..45731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL83_RS01810 (QPL83_01810) tmk 35600..36226 (+) 627 WP_000677211.1 dTMP kinase -
  QPL83_RS01815 (QPL83_01815) holB 36262..37245 (+) 984 WP_000754512.1 DNA polymerase III subunit delta' -
  QPL83_RS01820 (QPL83_01820) - 37251..38078 (+) 828 WP_000272428.1 stage 0 sporulation family protein -
  QPL83_RS01825 (QPL83_01825) yabA 38093..38443 (+) 351 WP_000412058.1 DNA replication initiation control protein YabA -
  QPL83_RS01830 (QPL83_01830) - 38565..39305 (+) 741 WP_001055365.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QPL83_RS01835 (QPL83_01835) - 39292..39582 (+) 291 WP_000414346.1 GIY-YIG nuclease family protein -
  QPL83_RS01840 (QPL83_01840) rsmI 39551..40426 (+) 876 WP_000267799.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QPL83_RS01845 (QPL83_01845) abrB 40447..40731 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QPL83_RS01850 (QPL83_01850) metG 41212..43221 (+) 2010 WP_222676311.1 methionine--tRNA ligase -
  QPL83_RS01855 (QPL83_01855) - 43390..44157 (+) 768 WP_000895828.1 TatD family hydrolase -
  QPL83_RS01860 (QPL83_01860) rnmV 44377..44934 (+) 558 WP_000692838.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=838349 QPL83_RS01845 WP_000843036.1 40447..40731(-) (abrB) [Bacillus toyonensis strain Monterrey_S3]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=838349 QPL83_RS01845 WP_000843036.1 40447..40731(-) (abrB) [Bacillus toyonensis strain Monterrey_S3]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTTGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851