Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   VDS57_RS09975 Genome accession   NZ_CP141839
Coordinates   1879254..1880081 (+) Length   275 a.a.
NCBI ID   WP_003226767.1    Uniprot ID   A0ABU0VCW3
Organism   Bacillus subtilis strain PN1236     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1874254..1885081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS09950 (VDS57_09950) efpO 1875317..1876759 (+) 1443 WP_324271408.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  VDS57_RS09955 (VDS57_09955) tmk 1876756..1877394 (+) 639 WP_003243137.1 dTMP kinase -
  VDS57_RS09960 (VDS57_09960) darA 1877468..1877797 (+) 330 WP_088272133.1 cyclic di-AMP receptor DarA -
  VDS57_RS09965 (VDS57_09965) yaaR 1877810..1878250 (+) 441 WP_009966249.1 YaaR family protein -
  VDS57_RS09970 (VDS57_09970) holB 1878262..1879251 (+) 990 WP_088272134.1 DNA polymerase III subunit delta' -
  VDS57_RS09975 (VDS57_09975) yaaT 1879254..1880081 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT Regulator
  VDS57_RS09980 (VDS57_09980) yabA 1880096..1880455 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  VDS57_RS09985 (VDS57_09985) trmNF 1880514..1881257 (+) 744 WP_041338388.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  VDS57_RS09990 (VDS57_09990) yazA 1881244..1881543 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  VDS57_RS09995 (VDS57_09995) rsmI 1881518..1882396 (+) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  VDS57_RS10000 (VDS57_10000) abrB 1882445..1882735 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 31233.09 Da        Isoelectric Point: 4.7700

>NTDB_id=838336 VDS57_RS09975 WP_003226767.1 1879254..1880081(+) (yaaT) [Bacillus subtilis strain PN1236]
MYNVIGVRFKKAGKIYYFDPNGFHIEHDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADERDLLIVEENKQ
EALSAFDICQKKVIEHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDIGEMITTANGPAKVVGLNI
LERVLQVELINREKVIEYTWEELLEEGVVSAQTTD

Nucleotide


Download         Length: 828 bp        

>NTDB_id=838336 VDS57_RS09975 WP_003226767.1 1879254..1880081(+) (yaaT) [Bacillus subtilis strain PN1236]
TTGTACAATGTAATTGGTGTCCGCTTTAAGAAAGCGGGTAAAATATATTATTTTGATCCGAATGGATTTCATATAGAACA
TGACAGCTGCGTAATTGTAGAAACTGTCAGAGGCGTTGAGTACGGCCAGGTCGTAATTGCAAATAAACAGGTGGATGAGC
ATGATGTGGTGCTTCCCCTTCGAAAAGTGATACGTGTGGCTGACGAGCGCGATCTTCTCATTGTAGAAGAAAATAAACAG
GAAGCACTATCAGCATTTGATATCTGCCAAAAGAAAGTGATTGAGCATGGCTTGGATATGAAGCTGGTCGATGTTGAATT
CACGTTTGATCGCAATAAAGTCATTTTTTACTTCACTGCTGACGGCCGAGTCGACTTTAGAGAGCTTGTAAAGGATTTGG
CTTCTATCTTTAAGACAAGAATTGAGCTGCGCCAAATCGGAGTAAGGGATGAGGCAAAAATGCTCGGAGGAATCGGTCCT
TGCGGAAGAATGCTTTGCTGTTCAACGTTTCTTGGAGATTTTGAACCCGTTTCCATTAAAATGGCCAAGGATCAGAACTT
GTCTTTAAATCCTACGAAGATTTCGGGTCTTTGCGGACGATTGATGTGCTGTCTAAAATATGAGAACGATGAGTATGAGA
CGGCAAAAGAACAGCTTCCGGATATAGGAGAAATGATTACGACAGCAAACGGTCCCGCGAAGGTCGTCGGACTAAATATT
CTGGAACGGGTGCTTCAGGTGGAACTGATAAACCGTGAAAAAGTGATAGAATATACTTGGGAAGAGCTCTTGGAAGAGGG
CGTCGTATCCGCACAAACCACAGATTAA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(62-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

99.636

100

0.996