Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   VDS57_RS09410 Genome accession   NZ_CP141839
Coordinates   1779707..1780501 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain PN1236     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774707..1785501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS09375 (VDS57_09375) - 1775077..1775631 (-) 555 WP_015715050.1 SdpA family antimicrobial peptide system protein -
  VDS57_RS09380 (VDS57_09380) - 1775815..1776450 (-) 636 WP_014481470.1 SdpI family protein -
  VDS57_RS09385 (VDS57_09385) - 1776450..1776734 (-) 285 WP_015715052.1 autorepressor SdpR family transcription factor -
  VDS57_RS09390 (VDS57_09390) - 1776961..1778108 (+) 1148 Protein_1848 sigma-54 interaction domain-containing protein -
  VDS57_RS09395 (VDS57_09395) - 1778090..1778242 (-) 153 Protein_1849 ATP-binding protein -
  VDS57_RS09400 (VDS57_09400) - 1778270..1778402 (-) 133 Protein_1850 hypothetical protein -
  VDS57_RS09405 (VDS57_09405) htrA 1778423..1779625 (-) 1203 WP_046161071.1 serine protease HtrC Regulator
  VDS57_RS09410 (VDS57_09410) vicX 1779707..1780501 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  VDS57_RS09415 (VDS57_09415) walI 1780523..1781365 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  VDS57_RS09420 (VDS57_09420) walH 1781352..1782719 (-) 1368 WP_014481474.1 WalRK two-component regulatory system regulator WalH -
  VDS57_RS09425 (VDS57_09425) walK 1782709..1784544 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  VDS57_RS09430 (VDS57_09430) walR 1784552..1785259 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=838330 VDS57_RS09410 WP_003226939.1 1779707..1780501(-) (vicX) [Bacillus subtilis strain PN1236]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=838330 VDS57_RS09410 WP_003226939.1 1779707..1780501(-) (vicX) [Bacillus subtilis strain PN1236]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTAATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATTGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAATCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53