Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   VDS57_RS08960 Genome accession   NZ_CP141839
Coordinates   1691994..1692683 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain PN1236     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686994..1697683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS08940 (VDS57_08940) yxeA 1687923..1688270 (-) 348 WP_003227084.1 YxeA family protein -
  VDS57_RS08945 (VDS57_08945) yxdM 1688284..1690168 (-) 1885 Protein_1758 ABC transporter permease YxdM -
  VDS57_RS08950 (VDS57_08950) tpeL 1690143..1690876 (-) 734 Protein_1759 ABC transporter ATP-binding protein -
  VDS57_RS08955 (VDS57_08955) yxdK 1691020..1691997 (-) 978 WP_324271414.1 two-component system sensor histidine kinase YxdK -
  VDS57_RS08960 (VDS57_08960) braR 1691994..1692683 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  VDS57_RS08965 (VDS57_08965) iolJ 1692791..1693663 (-) 873 WP_003242766.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  VDS57_RS08970 (VDS57_08970) iolI 1693684..1694520 (-) 837 WP_014481412.1 2-keto-myo-inositol isomerase -
  VDS57_RS08975 (VDS57_08975) iolH 1694606..1695475 (-) 870 WP_324271413.1 sugar phosphate isomerase/epimerase -
  VDS57_RS08980 (VDS57_08980) iolG 1695495..1696529 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=838328 VDS57_RS08960 WP_003243527.1 1691994..1692683(-) (braR) [Bacillus subtilis strain PN1236]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=838328 VDS57_RS08960 WP_003243527.1 1691994..1692683(-) (braR) [Bacillus subtilis strain PN1236]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406