Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QPL77_RS07720 Genome accession   NZ_CP126521
Coordinates   1556474..1557376 (+) Length   300 a.a.
NCBI ID   WP_211063842.1    Uniprot ID   -
Organism   Bacillus pumilus strain Monterrey_S2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1551474..1562376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS07700 (QPL77_07700) - 1552140..1553876 (+) 1737 WP_211063844.1 glycosyltransferase -
  QPL77_RS07705 (QPL77_07705) - 1553873..1554148 (+) 276 WP_144521394.1 FlhB-like flagellar biosynthesis protein -
  QPL77_RS07710 (QPL77_07710) sucC 1554325..1555485 (+) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  QPL77_RS07715 (QPL77_07715) sucD 1555508..1556410 (+) 903 WP_211063843.1 succinate--CoA ligase subunit alpha -
  QPL77_RS07720 (QPL77_07720) dprA 1556474..1557376 (+) 903 WP_211063842.1 DNA-processing protein DprA Machinery gene
  QPL77_RS07725 (QPL77_07725) topA 1557570..1559645 (+) 2076 WP_012009947.1 type I DNA topoisomerase -
  QPL77_RS07730 (QPL77_07730) trmFO 1559716..1561020 (+) 1305 WP_211063841.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QPL77_RS07735 (QPL77_07735) xerC 1561083..1562000 (+) 918 WP_144521400.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34115.51 Da        Isoelectric Point: 8.8758

>NTDB_id=838312 QPL77_RS07720 WP_211063842.1 1556474..1557376(+) (dprA) [Bacillus pumilus strain Monterrey_S2]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPVFQQIVQAYLKQNIHM
IPITSPIYPNTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKENWMIVSGLAKGIDGLAH
KECMRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPAKLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=838312 QPL77_RS07720 WP_211063842.1 1556474..1557376(+) (dprA) [Bacillus pumilus strain Monterrey_S2]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTCACCC
GCCTAAAACAAGCCGAAGAAAAAGAATTCCCCGTTTTTCAACAAATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCATATATCCCAACACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCGTATTTAAATGAAGAAAAGAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAACTTGTAAAGGAAAATTGGATGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATGAGGAATAAAGGGAAAACGATTGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTGTCTGAGCATCCACCTTATGTCAAACCAGAAAAGTGGCATT
TTCCTTTGAGGAATCGTTTAATTAGTGCGCTCACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCGTATCAAGCACTTGAGCAAGGTAAAGAGGTATTTGCCGTTGCTGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAAACTTATACAGCAGGGAGCAAAGCTTGTTCATTCTACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGTG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Lactococcus lactis subsp. cremoris KW2

38.194

96

0.367