Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QPL77_RS06895 Genome accession   NZ_CP126521
Coordinates   1393599..1393877 (+) Length   92 a.a.
NCBI ID   WP_012009813.1    Uniprot ID   A8FCR0
Organism   Bacillus pumilus strain Monterrey_S2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388599..1398877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS06875 (QPL77_06875) - 1388926..1390545 (+) 1620 WP_050945126.1 ATP-binding cassette domain-containing protein -
  QPL77_RS06880 (QPL77_06880) - 1390772..1392004 (-) 1233 WP_211063897.1 aminopeptidase -
  QPL77_RS06885 (QPL77_06885) - 1392110..1392241 (-) 132 WP_003210922.1 protein YkpC -
  QPL77_RS06890 (QPL77_06890) mreBH 1392316..1393323 (-) 1008 WP_144523207.1 rod-share determining protein MreBH -
  QPL77_RS06895 (QPL77_06895) abrB 1393599..1393877 (+) 279 WP_012009813.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QPL77_RS06900 (QPL77_06900) - 1394022..1395332 (+) 1311 WP_144523206.1 ATP-binding protein -
  QPL77_RS06905 (QPL77_06905) - 1395337..1396173 (+) 837 WP_144523205.1 gamma-glutamylcyclotransferase -
  QPL77_RS06910 (QPL77_06910) - 1396211..1396879 (+) 669 WP_144523204.1 TrkA family potassium uptake protein -
  QPL77_RS06915 (QPL77_06915) ade 1397142..1398872 (+) 1731 WP_211063896.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10291.94 Da        Isoelectric Point: 4.5216

>NTDB_id=838311 QPL77_RS06895 WP_012009813.1 1393599..1393877(+) (abrB) [Bacillus pumilus strain Monterrey_S2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=838311 QPL77_RS06895 WP_012009813.1 1393599..1393877(+) (abrB) [Bacillus pumilus strain Monterrey_S2]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTAATGCCAATCGAACTGAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGATAAAATCGTCTTGAAAAAATACCAGCCAGAAGGTGTTT
GCCTCATGACTGGTGAGATTACATCAGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTATTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FCR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543