Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   VDS57_RS05080 Genome accession   NZ_CP141839
Coordinates   939372..940097 (-) Length   241 a.a.
NCBI ID   WP_014480811.1    Uniprot ID   -
Organism   Bacillus subtilis strain PN1236     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 934372..945097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VDS57_RS05070 (VDS57_05070) - 934751..936547 (-) 1797 WP_014480806.1 M3 family oligoendopeptidase -
  VDS57_RS05075 (VDS57_05075) - 938179..939375 (-) 1197 WP_029318434.1 ABC transporter permease -
  VDS57_RS05080 (VDS57_05080) pptA 939372..940097 (-) 726 WP_014480811.1 ABC transporter ATP-binding protein Regulator
  VDS57_RS05085 (VDS57_05085) - 940155..941261 (-) 1107 WP_014480812.1 methyltransferase -
  VDS57_RS05090 (VDS57_05090) - 941291..942532 (-) 1242 WP_014480813.1 MFS transporter -
  VDS57_RS05095 (VDS57_05095) - 942522..943028 (-) 507 WP_162985488.1 GNAT family N-acetyltransferase -
  VDS57_RS05100 (VDS57_05100) - 943046..944380 (-) 1335 WP_014480815.1 glutathionylspermidine synthase family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27577.45 Da        Isoelectric Point: 7.9039

>NTDB_id=838308 VDS57_RS05080 WP_014480811.1 939372..940097(-) (pptA) [Bacillus subtilis strain PN1236]
MLRVEQVTGGYKRNKMANHNISFQIDKGEIVGLVGLNGAGKSTIIKHILGILKPTEGRVTLDGVSLRDDPSYFRPRISYI
PEVPQLYQELTLWEHLEFTASAYKMKREKFELKAAELLKKFRMEKKINDYPQTFSKGMQQKVMILCAFLVEAVFFIIDEP
FVGLDPLAIDTLIDLMVEMKQRGMGILVSTHILTMAEKYCDRVVFLHEGKVKVQGTIQEIQDQMKMNDVSLEEMFIGVVK
N

Nucleotide


Download         Length: 726 bp        

>NTDB_id=838308 VDS57_RS05080 WP_014480811.1 939372..940097(-) (pptA) [Bacillus subtilis strain PN1236]
ATGTTGCGCGTAGAACAGGTTACAGGAGGTTATAAGCGTAATAAGATGGCAAACCACAATATTTCTTTTCAGATTGATAA
AGGGGAAATAGTTGGTTTAGTTGGGCTAAATGGTGCGGGGAAAAGCACGATCATTAAGCACATCTTAGGTATCTTAAAAC
CCACTGAAGGCCGTGTTACACTTGATGGTGTGTCATTAAGAGATGATCCCTCCTATTTTAGGCCGCGTATTTCCTATATC
CCTGAAGTTCCTCAATTATATCAAGAATTAACTCTTTGGGAACATTTGGAATTCACTGCATCAGCTTATAAAATGAAAAG
AGAAAAATTCGAATTAAAAGCGGCCGAACTGTTAAAAAAATTTAGAATGGAAAAAAAAATAAATGATTACCCGCAGACTT
TTTCGAAGGGGATGCAACAAAAGGTTATGATTCTTTGTGCCTTCTTGGTTGAAGCAGTTTTCTTTATTATTGATGAACCC
TTTGTTGGGCTAGACCCTTTAGCAATTGATACATTAATTGATTTAATGGTTGAAATGAAACAGAGGGGAATGGGAATCCT
TGTTTCTACTCATATTTTAACTATGGCTGAAAAATATTGTGACCGTGTTGTTTTCTTACATGAGGGAAAGGTTAAGGTGC
AAGGAACCATTCAGGAAATTCAAGATCAGATGAAAATGAATGATGTTTCATTAGAAGAAATGTTTATTGGGGTTGTGAAA
AATTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

48.548

100

0.485
  pptA Streptococcus thermophilus LMD-9

48.548

100

0.485