Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QPL77_RS01925 Genome accession   NZ_CP126521
Coordinates   356739..357167 (-) Length   142 a.a.
NCBI ID   WP_119124397.1    Uniprot ID   -
Organism   Bacillus pumilus strain Monterrey_S2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 351739..362167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS01895 (QPL77_01895) - 351896..352225 (+) 330 WP_088000604.1 YckD family protein -
  QPL77_RS01900 (QPL77_01900) - 352273..353037 (-) 765 WP_211063366.1 MBL fold metallo-hydrolase -
  QPL77_RS01905 (QPL77_01905) - 353153..353569 (+) 417 WP_169057411.1 Lrp/AsnC family transcriptional regulator -
  QPL77_RS01910 (QPL77_01910) - 353599..354405 (+) 807 WP_211063365.1 AAC(3) family N-acetyltransferase -
  QPL77_RS01915 (QPL77_01915) - 354407..354793 (-) 387 WP_211063364.1 competence protein ComJ -
  QPL77_RS01920 (QPL77_01920) - 354914..356611 (-) 1698 WP_211063363.1 methyl-accepting chemotaxis protein -
  QPL77_RS01925 (QPL77_01925) nucA/comI 356739..357167 (-) 429 WP_119124397.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QPL77_RS01930 (QPL77_01930) - 357535..359604 (+) 2070 WP_211063362.1 hydantoinase/oxoprolinase family protein -
  QPL77_RS01935 (QPL77_01935) - 359594..361579 (+) 1986 WP_211063361.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15899.83 Da        Isoelectric Point: 5.2116

>NTDB_id=838291 QPL77_RS01925 WP_119124397.1 356739..357167(-) (nucA/comI) [Bacillus pumilus strain Monterrey_S2]
MKLLKIILLLLLIVIGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRIHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=838291 QPL77_RS01925 WP_119124397.1 356739..357167(-) (nucA/comI) [Bacillus pumilus strain Monterrey_S2]
ATGAAACTTCTTAAAATTATTCTCTTGCTTTTACTGATCGTCATTGGTGTAGCAACAGGCTATATTCAACTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACGATTCACTTCCCATCAGATCGTTATCCCGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTATACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATTCCAACAAAGCGCGGATATGATCGGGATGAATGGCCTATGGCGATGTGTAAGGAAGGAGGAACAGGGGC
TTCAGTCAAGTATATTAGTCCTTCAGATAATAGAGGAGCAGGCTCATGGGTCGGTCATCAATTATCGGATGATCCCGATG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.942

85.211

0.57