Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QPL77_RS00020 Genome accession   NZ_CP126521
Coordinates   3057..4169 (+) Length   370 a.a.
NCBI ID   WP_211062815.1    Uniprot ID   W6I0L5
Organism   Bacillus pumilus strain Monterrey_S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL77_RS00005 (QPL77_00005) dnaA 1..1341 (+) 1341 WP_144486186.1 chromosomal replication initiator protein DnaA -
  QPL77_RS00010 (QPL77_00010) dnaN 1538..2674 (+) 1137 WP_041815072.1 DNA polymerase III subunit beta -
  QPL77_RS00015 (QPL77_00015) yaaA 2825..3040 (+) 216 WP_041815077.1 S4 domain-containing protein YaaA -
  QPL77_RS00020 (QPL77_00020) recF 3057..4169 (+) 1113 WP_211062815.1 DNA replication/repair protein RecF Machinery gene
  QPL77_RS00025 (QPL77_00025) - 4187..4432 (+) 246 WP_041815080.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  QPL77_RS00030 (QPL77_00030) gyrB 4490..6406 (+) 1917 WP_211062831.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QPL77_RS00035 (QPL77_00035) gyrA 6639..9140 (+) 2502 WP_211062816.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42520.60 Da        Isoelectric Point: 7.3979

>NTDB_id=838286 QPL77_RS00020 WP_211062815.1 3057..4169(+) (recF) [Bacillus pumilus strain Monterrey_S2]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHLGISRELETLTLQYHTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=838286 QPL77_RS00020 WP_211062815.1 3057..4169(+) (recF) [Bacillus pumilus strain Monterrey_S2]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGCTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTAAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATTCTCTCTCAGCGG
AATCACTACTTGAAACAATTGCAGACTAGAAAGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCACAGCCGTTGCATTTGGGTA
TTTCTAGAGAGCTGGAAACACTCACGCTCCAATACCACACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACGCTGTGGGGGCCTCACAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGACTTGATACACGAAGAAATCGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGTATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6I0L5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

84.011

99.73

0.838