Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QPL81_RS23305 Genome accession   NZ_CP126520
Coordinates   4115045..4116088 (-) Length   347 a.a.
NCBI ID   WP_001013172.1    Uniprot ID   -
Organism   Bacillus toyonensis strain Cuernavaca_S4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4110045..4121088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL81_RS23260 (QPL81_23260) - 4110469..4110669 (-) 201 WP_000106086.1 YqzE family protein -
  QPL81_RS23265 (QPL81_23265) - 4110708..4111205 (-) 498 WP_000836652.1 shikimate kinase -
  QPL81_RS23270 (QPL81_23270) - 4111326..4111976 (-) 651 WP_000183873.1 2OG-Fe(II) oxygenase -
  QPL81_RS23275 (QPL81_23275) comGG 4112122..4112523 (-) 402 WP_284557054.1 competence type IV pilus minor pilin ComGG -
  QPL81_RS23280 (QPL81_23280) comGF 4112520..4112993 (-) 474 WP_000477945.1 competence type IV pilus minor pilin ComGF -
  QPL81_RS23285 (QPL81_23285) - 4112963..4113265 (-) 303 WP_000829524.1 hypothetical protein -
  QPL81_RS23290 (QPL81_23290) comGD 4113258..4113713 (-) 456 WP_000810404.1 competence type IV pilus minor pilin ComGD -
  QPL81_RS23295 (QPL81_23295) comGC 4113710..4114009 (-) 300 WP_001178691.1 competence type IV pilus major pilin ComGC -
  QPL81_RS23300 (QPL81_23300) comGB 4114021..4115058 (-) 1038 WP_002093281.1 competence type IV pilus assembly protein ComGB -
  QPL81_RS23305 (QPL81_23305) comGA 4115045..4116088 (-) 1044 WP_001013172.1 competence type IV pilus ATPase ComGA Machinery gene
  QPL81_RS23310 (QPL81_23310) - 4116293..4116988 (+) 696 WP_000434112.1 helix-turn-helix domain-containing protein -
  QPL81_RS23315 (QPL81_23315) - 4117114..4117356 (+) 243 WP_000440717.1 DUF2626 domain-containing protein -
  QPL81_RS23320 (QPL81_23320) - 4117464..4118858 (+) 1395 WP_001094350.1 L-cystine transporter -
  QPL81_RS23325 (QPL81_23325) - 4118921..4119313 (-) 393 WP_000875407.1 hypothetical protein -
  QPL81_RS23330 (QPL81_23330) - 4119401..4119616 (-) 216 WP_001008324.1 DUF3912 family protein -
  QPL81_RS23335 (QPL81_23335) - 4119869..4120180 (+) 312 WP_001092833.1 hypothetical protein -
  QPL81_RS23340 (QPL81_23340) - 4120216..4120704 (-) 489 WP_000764243.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39204.57 Da        Isoelectric Point: 8.5491

>NTDB_id=838270 QPL81_RS23305 WP_001013172.1 4115045..4116088(-) (comGA) [Bacillus toyonensis strain Cuernavaca_S4]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLITKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQIDGQEVYLRLSTLPTVYRESLVIRLHLQASVQPLSHLSLFPSTAEKLLSFLRYSHGLLVFTGPTGSGKTTTMYALLEV
IRKRKTRRIVTLEDPVEKRKDDLLQIQINEKAGITYEAGLKAILRHDPDIILVGEIRDEETAKIAVRASLTGHLVMTTLH
TNDAKGAILRFMDYGITRQEIEQALLAVAAQRLVELKCPFCRGKCSILCKSMRQVRQASVYELLDGYDLQQAIKEANGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=838270 QPL81_RS23305 WP_001013172.1 4115045..4116088(-) (comGA) [Bacillus toyonensis strain Cuernavaca_S4]
ATGAATGGAATTGAAATTTTTGCGAATACAATTTTGAAAGAAGCGTGTAGGGTACAAGCATCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGCGGTTCAGCTACGTATAGGAAAAGATTTAATTACGAAACAATGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCGCACTTTAAATTTTTGGCATCCATGGATATAGGAGAGAGGCGGAAGCCACAAAATGGTTCATTGTAT
TTACAAATTGATGGACAAGAAGTGTATTTACGTCTTTCAACACTTCCGACTGTATATCGAGAAAGTCTCGTGATTCGCCT
TCATTTACAAGCATCTGTGCAGCCATTATCTCATCTTTCGTTATTTCCAAGTACGGCGGAAAAACTCCTCTCTTTTTTAC
GTTATTCACATGGTCTACTCGTATTTACTGGACCGACTGGTTCTGGGAAGACAACGACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAGGAAAACACGTCGAATTGTAACACTTGAAGACCCAGTTGAAAAAAGAAAAGACGATTTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTACGCCATGATCCAGATATTATATTAGTTG
GTGAAATCCGGGATGAAGAAACAGCAAAAATAGCTGTAAGAGCAAGTTTAACTGGACATTTAGTAATGACGACCCTGCAT
ACGAATGATGCGAAAGGAGCGATACTCAGATTTATGGATTATGGCATAACGAGGCAAGAAATTGAACAAGCTTTATTGGC
TGTAGCTGCACAGCGACTTGTTGAATTAAAGTGTCCATTTTGCAGAGGAAAGTGCTCAATTTTATGTAAATCAATGCGGC
AAGTAAGACAAGCAAGCGTTTACGAGTTGTTAGATGGATATGATTTGCAACAAGCAATTAAAGAAGCGAACGGAGAATGT
GTTACGTACAAACATGAAACATTAGAATCTTCGATACGAAAAGGGTATGCTTTAGGATTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.637

100

0.576