Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VA212_RS05820 Genome accession   NZ_CP141838
Coordinates   1195522..1196565 (-) Length   347 a.a.
NCBI ID   WP_000963126.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190522..1201565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA212_RS05790 - 1190785..1191882 (+) 1098 WP_324660030.1 glycosyltransferase family 8 protein -
  VA212_RS05795 - 1191879..1192835 (-) 957 WP_000952282.1 PDC sensor domain-containing protein -
  VA212_RS05800 - 1192857..1193345 (-) 489 WP_001216271.1 shikimate kinase -
  VA212_RS05805 - 1193350..1193946 (-) 597 WP_165697335.1 AMIN domain-containing protein -
  VA212_RS05810 - 1193962..1194237 (-) 276 WP_180433555.1 hypothetical protein -
  VA212_RS05815 eno 1194230..1195510 (-) 1281 WP_000955621.1 phosphopyruvate hydratase -
  VA212_RS05820 recA 1195522..1196565 (-) 1044 WP_000963126.1 recombinase RecA Machinery gene
  VA212_RS05825 - 1196664..1197530 (+) 867 WP_324660045.1 menaquinone biosynthesis family protein -
  VA212_RS05830 - 1197527..1198294 (-) 768 WP_057111969.1 hypothetical protein -
  VA212_RS05835 - 1198383..1198964 (-) 582 WP_324660047.1 hypothetical protein -
  VA212_RS05840 - 1198976..1199560 (-) 585 WP_025447816.1 hypothetical protein -
  VA212_RS05845 - 1199661..1199867 (-) 207 WP_096464170.1 DUF4006 family protein -
  VA212_RS05850 ccoP 1199878..1200756 (-) 879 WP_096467913.1 cytochrome-c oxidase, cbb3-type subunit III -
  VA212_RS05855 - 1200758..1200976 (-) 219 WP_001868213.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37669.40 Da        Isoelectric Point: 5.7176

>NTDB_id=838262 VA212_RS05820 WP_000963126.1 1195522..1196565(-) (recA) [Helicobacter pylori strain P07928]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=838262 VA212_RS05820 WP_000963126.1 1195522..1196565(-) (recA) [Helicobacter pylori strain P07928]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGTTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGGGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCTTAGATGTGCATTATGCTAAGAG
GTTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTCTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCTGTAGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACTACTTTAATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTAAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.424

100

0.994
  recA Helicobacter pylori 26695

99.424

100

0.994
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Staphylococcus aureus strain ATCC 12600

63.636

98.271

0.625
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Acinetobacter nosocomialis M2

62.865

98.559

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.914

94.236

0.602
  recA Acinetobacter baylyi ADP1

63.609

94.236

0.599
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Pseudomonas stutzeri DSM 10701

60.526

98.559

0.597
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae R36A

55.84

100

0.565
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus thermophilus LMD-9

56.667

95.101

0.539
  recA Streptococcus thermophilus LMG 18311

56.667

95.101

0.539
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53