Detailed information NTG0838259

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VA212_RS05245
• Genome accession: NZ_CP141838
• Coordinates: 1080403..1082973 (-)
• Length: 856 a.a.
• NCBI ID: WP_324659851.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P07928
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1075403..1087973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA212_RS05220	miaB	1075641..1076954 (-)	1314	WP_180630799.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
VA212_RS05225	-	1076964..1077206 (-)	243	WP_000780041.1	nuclease	-
VA212_RS05230	mqnF	1077267..1078496 (-)	1230	WP_324659849.1	aminofutalosine deaminase	-
VA212_RS05235	-	1078481..1079617 (-)	1137	WP_064431198.1	amidohydrolase family protein	-
VA212_RS05240	-	1079627..1080346 (-)	720	WP_021302804.1	cytochrome c biogenesis protein CcdA	-
VA212_RS05245	clpC	1080403..1082973 (-)	2571	WP_324659851.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
VA212_RS05250	-	1083045..1083803 (-)	759	WP_000806059.1	DNA-methyltransferase	-
VA212_RS05255	-	1083800..1084495 (-)	696	WP_324659853.1	BsaWI family type II restriction enzyme	-
VA212_RS05260	-	1084677..1085291 (+)	615	WP_024948159.1	hypothetical protein	-
VA212_RS05265	-	1085302..1086456 (+)	1155	WP_324659855.1	site-specific DNA-methyltransferase	-
VA212_RS05270	xseA	1086475..1087737 (-)	1263	WP_324659857.1	exodeoxyribonuclease VII large subunit	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96483.29 Da
• Isoelectric Point: 6.0071

>NTDB_id=838259 VA212_RS05245 WP_324659851.1 1080403..1082973(-) (clpC) [Helicobacter pylori strain P07928]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKLAKVSQINK
QNIQLNQALIQSLENAQGLMAKIGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLEALRKGATIQDKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFKEISRLKMETESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGVLLEENLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAVANIVGILFENIQKKALERGINITLDEEAKEL
IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK

Nucleotide

• Length: 2571 bp

>NTDB_id=838259 VA212_RS05245 WP_324659851.1 1080403..1082973(-) (clpC) [Helicobacter pylori strain P07928]
ATGAATTTATTTGAAAAAATGACCGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTCTAGCCTTACACCATAAAAA
CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTCAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA
TGTCTGTGGATATTCAAGCCTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTGGCTAAAGTTTCACAAATCAACAAG
CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAATTGGCGATTCTTT
CATCGCTACAGATGTGTATCTTTTGGCGAACATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAGGCTTTAAGAAAAGGCGCGACTATCCAAGATAAAAACGATGATTCTAATTTGGAAAGTTTGGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTCGATCCGGTGATTGGGAGGGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTATTGGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG
TGGAGGGTTTGGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATTTA
AGCTTGTTGGTGGCTGGAGCGAAATACAGAGGTGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTGAAAAAAAG
CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTGAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCACTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAGGCTTTACAGATTTT
AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACCATCAACGACTCCGCGCTCATAGCGAGTGCCAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCCCAATTAAAAATG
CAAATGGAATCAGAGCCGGCAAAACTCTCCAGCGTTAAGCGCTCCATTCAAAGATTGGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATCTGAAAGAAGAAAAAATCC
AATTAGAAGCACAATTTGAAAACGAAAAAGAAGTGTTTAAAGAAATTTCACGCTTGAAAATGGAAACGGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAACGGGGATTACCAGCAAGCGGGCGAAATTGAATACTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAAGAATTGCAGCATAAATGGGAAGCGATGCAACAAAACGGGGCGTTGTTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATCCCGGTCCAAAAAATGCTCCAAAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCAATCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCTGGGCTTAGCGATAGCAATAAACCCATAGGGAGCTTTCTCTTTTTGGGGCCAACGGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGATATGAGCGAATACATGGAAAAA
CATGCCATAAGCCGTCTTATTGGGGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG
CAGAAAACCCTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAATCTTTTGTTGCAGGTTT
TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGGCGTGCTTTTGGAAGAAAATTTGAGTGAAGCCGATAAACAAAAAGCGATTAAAGAGAGCTTGAGGCAATTCTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGCCATGCTGTCGCTAATATCGTGG
GGATTCTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAGAGGCAAAAGAATTG
ATCGCTGAAGCGGGATTTGACAGATTTTATGGCGCTAGACCCTTAAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATCTTAGAGGATAAAATTAAAGAAAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAAATTGTGCCTA
AGATTAAGTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-142)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• AAA lid domain (AAA_lid_9) (339-440)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.07	100	0.439
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	40.863	100	0.421