Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QPL81_RS12000 Genome accession   NZ_CP126520
Coordinates   1893855..1894142 (+) Length   95 a.a.
NCBI ID   WP_000648323.1    Uniprot ID   A0A1V6LCK0
Organism   Bacillus toyonensis strain Cuernavaca_S4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888855..1899142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL81_RS11980 (QPL81_11980) - 1889937..1890134 (+) 198 WP_000362874.1 DUF4083 domain-containing protein -
  QPL81_RS11985 (QPL81_11985) - 1890264..1890725 (+) 462 WP_000796418.1 NUDIX hydrolase -
  QPL81_RS11990 (QPL81_11990) nadE 1890768..1891586 (-) 819 WP_000174902.1 ammonia-dependent NAD(+) synthetase -
  QPL81_RS11995 (QPL81_11995) - 1891860..1893740 (+) 1881 WP_001026007.1 ABC transporter permease -
  QPL81_RS12000 (QPL81_12000) abrB 1893855..1894142 (+) 288 WP_000648323.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QPL81_RS12005 (QPL81_12005) - 1894403..1895353 (+) 951 WP_001089054.1 serine protease -
  QPL81_RS12010 (QPL81_12010) - 1895394..1895702 (-) 309 WP_284557405.1 helix-turn-helix transcriptional regulator -
  QPL81_RS12015 (QPL81_12015) - 1895811..1896746 (+) 936 WP_000874084.1 aldo/keto reductase -
  QPL81_RS12020 (QPL81_12020) - 1896993..1897217 (-) 225 WP_000162608.1 hypothetical protein -
  QPL81_RS12025 (QPL81_12025) - 1897302..1897649 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -
  QPL81_RS12030 (QPL81_12030) - 1897844..1898371 (+) 528 WP_284557406.1 DinB family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10635.40 Da        Isoelectric Point: 5.8675

>NTDB_id=838259 QPL81_RS12000 WP_000648323.1 1893855..1894142(+) (abrB) [Bacillus toyonensis strain Cuernavaca_S4]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVDEDKVILQKYEPYNACQITGDVSDQNISLANGNITVSIDGAK
HLIKEIEKFLKKSEI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=838259 QPL81_RS12000 WP_000648323.1 1893855..1894142(+) (abrB) [Bacillus toyonensis strain Cuernavaca_S4]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTAAGAGATGTATTAGG
TATACAAATTAAATCACCACTTGAAATTTTCGTAGATGAAGATAAAGTCATTTTACAAAAATATGAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATCAGAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
CATTTAATAAAAGAAATAGAGAAGTTTTTAAAAAAAAGTGAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V6LCK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

95.789

0.537