Detailed information NTG0838249

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: VA212_RS03450
• Genome accession: NZ_CP141838
• Coordinates: 702995..705820 (-)
• Length: 941 a.a.
• NCBI ID: WP_324661328.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P07928
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 697995..710820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA212_RS03430	-	698163..698549 (+)	387	WP_001279184.1	diacylglycerol kinase	-
VA212_RS03435	gyrA	698569..701055 (+)	2487	WP_324661325.1	DNA topoisomerase (ATP-hydrolyzing) subunit A	-
VA212_RS03440	-	701055..701528 (+)	474	WP_162967621.1	hypothetical protein	-
VA212_RS03445	flgR	701525..702670 (+)	1146	WP_000684522.1	transcriptional activator FlgR	-
VA212_RS03450	uvrA	702995..705820 (-)	2826	WP_324661328.1	excinuclease ABC subunit UvrA	Machinery gene
VA212_RS03455	hopE	705995..706816 (+)	822	WP_324661330.1	Hop family outer membrane protein HopE	-
VA212_RS03460	rsmH	706997..707923 (+)	927	WP_324661331.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
VA212_RS03465	-	707943..708287 (+)	345	WP_324661332.1	hypothetical protein	-
VA212_RS03470	-	708532..709434 (+)	903	WP_324661334.1	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	-
VA212_RS03475	-	709623..709847 (+)	225	Protein_664	hypothetical protein	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 104772.75 Da
• Isoelectric Point: 7.7364

>NTDB_id=838249 VA212_RS03450 WP_324661328.1 702995..705820(-) (uvrA) [Helicobacter pylori strain P07928]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARIGEQICPTCLEPISSMSASDIISQICHLEENSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENSSRIASAVEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCEYNGIDTVLCFNELNKEQQDALLYGNGTEISFHFKNSLLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCEGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGRHGGEVVFSGSVKDLLQNNHSTALYLNGTKKIERPKLELPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKIQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGTKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMIVIEHNLDIIKNADYIIDMGPDGGDKGGKVIASGTPLEVAKNCEKTQSYTGKFLALELK

Nucleotide

• Length: 2826 bp

>NTDB_id=838249 VA212_RS03450 WP_324661328.1 702995..705820(-) (uvrA) [Helicobacter pylori strain P07928]
TTGCAACATAAAACCATTATGGATAAGATCATTATTCAAGGGGCTAGGGAAAATAATCTCAAAAATATTTTTTTAGAAAT
CCCTAAAAACCAATTTGTTGTTTTTACCGGATTAAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTTTATACGCTG
AAGGCCAAAGGCGCTATTTAGAGAGTTTGTCCAGCTATGCGAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAAATTGAAGGCCTAACCCCTGCGATTGCTATTGATCAAAAAACCACTTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGATTGGGGAGCAAATTTGCCCCACATGCTTAGAGCCCATCA
GTTCTATGAGTGCAAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTCTAGCCCCCATT
ATTAAAGATAAAAAAGGTTCGTTTAACGATAAATTAGAGAGCTTGCGTTTAAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAAGAAATCCATTTGCACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGGGTGG
TTATCAATAGCGAAAATTCTTCACGGATCGCTAGCGCAGTAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAACGCGCCAAGCATCAGGAAGCATTACAGCGAGCATAAGGCATGCTTTAAATGCAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCATTCAATTCGCCTAAAGGGGCGTGCGAGAGCTGTTTGGGTTTGGGGACAAAAT
TCAGCTTAGATATTAGTAAGATTTTAGATCCTAACACGCCTTTAAATCAAGGAGCGATTAAAGTGATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAAGGCTTTTGCGAGTATAATGGCATTGACACTGTGCTTTGTTTTAACGAATTGAA
TAAAGAACAACAGGACGCTCTTTTGTATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAACAGCCTTTTAAAACGCC
CTTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCGTGCGAGGGGCATCGTTTGAAAGCTTCAAGTTTGAGCGTTCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAAGTTTATCACTTTTTTAACGATCCCACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TCGCTGAACCCATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG
AGGGATGCACGAACGATTAGCGGAGGGGAGAGCCAAAGAATACGAATCGCTAGTCAAATCGGGAGTGGCTTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGTTTGCATGAAAAAGACACGCTCAAACTCATCAACACCCTTAGGAATTTAC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGATAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAGGCATGGGGGTGAAGTGGTTTTTAGCGGGAGCGTAAAAGATTTATTGCAAAACAACCATTCTACCGC
TTTGTATCTCAACGGCACTAAAAAGATTGAGCGCCCTAAATTGGAACTCCCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTAGTGTGCATTACTGGGGTGAGCGGG
AGCGGTAAAAGCTCGCTGATTTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAATTCAAAG
CTTGAACGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTAGACCAAGCCCCCATAGGCAAAACCC
CACGAAGCAACCCTGCCACTTATACAGGAGTGATGGATGAAATCAGGATTTTATTTGCCGAGCAAAAAGAAGCTAAAATT
TTAGGCTATAGCGCGAGCCGTTTTAGCTTTAATGTTAAAGGGGGGCGGTGCGAGAAATGCCAAGGCGATGGGGATATTAA
AATAGAAATGCATTTCTTGCCTGATGTGTTAGTCCAATGCGATAGCTGTAAGGGCACTAAATACAACCCCCAAACTTTAG
AAATCAAGGTGAAAGGCAAATCCATTGCCGATGTGTTGAACATGAGCGTGGAAGAAGCTTATGAATTTTTTGCTAAATTC
CCTAAAATCGCTGTGAAGTTAAAAACCCTTATAGATGTGGGCTTAGGCTATATCACTTTAGGGCAAAACGCTACGACTTT
AAGTGGGGGGGAGGCTCAAAGGATCAAATTAGCTAAAGAATTGAGCAAAAAAGACACAGGCAAAACCCTTTATATTTTAG
ATGAGCCTACCACCGGTTTGCATTTTGAAGACGTGAATCACCTTTTACAAGTCTTGCATTCTTTAGTAGCGTTAGGCAAT
TCCATGATAGTGATTGAGCATAATTTAGACATCATCAAAAACGCTGACTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGAGGGAAAGTCATTGCGAGCGGCACGCCTTTAGAGGTGGCTAAAAATTGTGAAAAAACCCAAAGCTATACGGGAA
AATTTTTAGCTTTGGAATTGAAATAG

Domains

Predicted by InterProScan.

• UvrA interaction domain (UvrA_inter) (137-243)

• ABC transporter (ABC_tran) (621-857)

• UvrA DNA-binding domain (UvrA_DNA-bind) (297-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	49.948	100	0.508
uvrA	Streptococcus pneumoniae TIGR4	49.948	100	0.508
uvrA	Streptococcus pneumoniae D39	49.948	100	0.508