Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   VA212_RS01005 Genome accession   NZ_CP141838
Coordinates   183295..184344 (-) Length   349 a.a.
NCBI ID   WP_324660764.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07928     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 178295..189344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA212_RS00985 rpsL 179423..179830 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  VA212_RS00990 rpsG 179846..180313 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  VA212_RS00995 fusA 180325..182403 (+) 2079 WP_324660761.1 elongation factor G -
  VA212_RS01000 - 182944..183108 (+) 165 WP_324660762.1 hypothetical protein -
  VA212_RS01005 waaF 183295..184344 (-) 1050 WP_324660764.1 lipopolysaccharide heptosyltransferase II Regulator
  VA212_RS01010 hisS 184406..185734 (+) 1329 WP_324660766.1 histidine--tRNA ligase -
  VA212_RS01015 asd 185721..186761 (+) 1041 WP_324660767.1 aspartate-semialdehyde dehydrogenase -
  VA212_RS01020 - 187191..188492 (+) 1302 WP_324660768.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39635.52 Da        Isoelectric Point: 9.4838

>NTDB_id=838240 VA212_RS01005 WP_324660764.1 183295..184344(-) (waaF) [Helicobacter pylori strain P07928]
MSVNAPKRMRILLRLPNWLGDGVMASPLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAVMAAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPTSYYAEVSAILLEEGHEIYFFGAKEDIIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIECIATLDLFITNDSGPMHVAASAQTPLIALFGPTDEEETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=838240 VA212_RS01005 WP_324660764.1 183295..184344(-) (waaF) [Helicobacter pylori strain P07928]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCCC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGGTAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTGAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAACTTCTTATTACGCTGAAGTTTCTGCTATTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATATTATCGTTTCTGAAGAAATTCTAAAACTCATCAAAGGCTTATTAAAAAACCCATTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGTGCATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAGAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361