Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   VF946_RS08955 Genome accession   NZ_CP141824
Coordinates   1760631..1761407 (-) Length   258 a.a.
NCBI ID   WP_012774987.1    Uniprot ID   A0A0H3N2A2
Organism   Streptococcus suis strain HB18     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1755631..1766407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS08930 - 1755986..1757758 (-) 1773 WP_024405460.1 glycoside hydrolase family 35 protein -
  VF946_RS08935 - 1757965..1758675 (+) 711 WP_004194099.1 GntR family transcriptional regulator -
  VF946_RS08940 - 1758815..1759546 (-) 732 WP_012774988.1 GntR family transcriptional regulator -
  VF946_RS08945 - 1759646..1759963 (-) 318 WP_004194104.1 DUF960 domain-containing protein -
  VF946_RS08950 - 1760021..1760554 (-) 534 WP_004194106.1 DUF402 domain-containing protein -
  VF946_RS08955 recX 1760631..1761407 (-) 777 WP_012774987.1 recombination regulator RecX Regulator
  VF946_RS08960 rlmD 1761445..1762797 (+) 1353 WP_012775501.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  VF946_RS08965 - 1763082..1763285 (+) 204 Protein_1742 transposase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30372.90 Da        Isoelectric Point: 9.3979

>NTDB_id=838208 VF946_RS08955 WP_012774987.1 1760631..1761407(-) (recX) [Streptococcus suis strain HB18]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSNYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKTLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYEAAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=838208 VF946_RS08955 WP_012774987.1 1760631..1761407(-) (recX) [Streptococcus suis strain HB18]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTAATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTCAAGATTGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAAACGCTGATTGATAAAAGACTGGCTGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGTAAGGGTTT
TTCTTATGAGGCGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATCGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTATGAATTGAAGCAAAGGTTGATACAGGCTTTG
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.206

100

0.364