Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QPL80_RS06950 Genome accession   NZ_CP126515
Coordinates   1222919..1223242 (-) Length   107 a.a.
NCBI ID   WP_000578877.1    Uniprot ID   A0A3P1BX61
Organism   Bacillus anthracis strain Mn106-1 head2 chi     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217919..1228242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL80_RS06925 (QPL80_06940) - 1218181..1219467 (+) 1287 WP_088314499.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QPL80_RS06930 (QPL80_06945) - 1219660..1220229 (+) 570 WP_000767817.1 signal peptidase I SipW -
  QPL80_RS06935 (QPL80_06950) - 1220292..1220879 (+) 588 WP_000172849.1 CalY family protein -
  QPL80_RS06940 (QPL80_06955) - 1221041..1221847 (+) 807 WP_071727902.1 DUF4047 domain-containing protein -
  QPL80_RS06945 (QPL80_06960) calY 1222249..1222842 (+) 594 WP_000053730.1 biofilm matrix protein CalY -
  QPL80_RS06950 (QPL80_06965) sinR 1222919..1223242 (-) 324 WP_000578877.1 helix-turn-helix domain-containing protein Regulator
  QPL80_RS06955 (QPL80_06970) - 1223322..1223456 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  QPL80_RS06960 (QPL80_06975) inhA1 1223800..1226190 (+) 2391 WP_088314546.1 M6 family metalloprotease immune inhibitor InhA1 -
  QPL80_RS06965 (QPL80_06980) - 1226362..1227729 (+) 1368 WP_193109065.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12320.15 Da        Isoelectric Point: 8.5404

>NTDB_id=838207 QPL80_RS06950 WP_000578877.1 1222919..1223242(-) (sinR) [Bacillus anthracis strain Mn106-1 head2 chi]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=838207 QPL80_RS06950 WP_000578877.1 1222919..1223242(-) (sinR) [Bacillus anthracis strain Mn106-1 head2 chi]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1BX61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692