Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   VF946_RS08730 Genome accession   NZ_CP141824
Coordinates   1713768..1714502 (-) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis strain HB18     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1708768..1719502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS08710 lepB 1708833..1709435 (-) 603 WP_014636242.1 signal peptidase I -
  VF946_RS08715 - 1709425..1709718 (-) 294 WP_002938694.1 hypothetical protein -
  VF946_RS08720 - 1710838..1712040 (+) 1203 WP_074415941.1 IS110 family transposase -
  VF946_RS08725 - 1712790..1713638 (-) 849 WP_024405613.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  VF946_RS08730 amiE 1713768..1714502 (-) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  VF946_RS08735 - 1714495..1715184 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  VF946_RS08740 - 1715310..1715540 (-) 231 WP_002938704.1 DUF1797 family protein -
  VF946_RS08745 clpE 1715764..1717992 (+) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  VF946_RS08750 - 1718178..1718639 (+) 462 WP_170240095.1 NUDIX hydrolase -
  VF946_RS08755 - 1718694..1719002 (+) 309 WP_002938710.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=838206 VF946_RS08730 WP_002943067.1 1713768..1714502(-) (amiE) [Streptococcus suis strain HB18]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=838206 VF946_RS08730 WP_002943067.1 1713768..1714502(-) (amiE) [Streptococcus suis strain HB18]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAAGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CAAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAGCGGATCGCTATTGCACGTGGTCTGGCTATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTTATGCAGGATTTAGC
CAAGTCGGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365