Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   VF946_RS08010 Genome accession   NZ_CP141824
Coordinates   1557223..1559436 (-) Length   737 a.a.
NCBI ID   WP_074389028.1    Uniprot ID   -
Organism   Streptococcus suis strain HB18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1552223..1564436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS07980 - 1552353..1553147 (-) 795 WP_023369775.1 Nif3-like dinuclear metal center hexameric protein -
  VF946_RS07985 - 1553137..1553820 (-) 684 WP_012775203.1 tRNA (adenine(22)-N(1))-methyltransferase -
  VF946_RS07990 - 1553822..1554496 (-) 675 WP_014735657.1 DnaD domain-containing protein -
  VF946_RS07995 metA 1554506..1555447 (-) 942 WP_014637718.1 homoserine O-acetyltransferase MetA -
  VF946_RS08000 - 1555551..1556063 (-) 513 WP_024382572.1 adenine phosphoribosyltransferase -
  VF946_RS08005 - 1556078..1557244 (-) 1167 WP_024405377.1 DUF3114 domain-containing protein -
  VF946_RS08010 recJ 1557223..1559436 (-) 2214 WP_074389028.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  VF946_RS08015 cls 1559593..1561140 (-) 1548 WP_023369761.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82763.50 Da        Isoelectric Point: 4.5592

>NTDB_id=838199 VF946_RS08010 WP_074389028.1 1557223..1559436(-) (recJ) [Streptococcus suis strain HB18]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEEFHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEHILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELMKIAGIDMDSLDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRRDRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVVVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHANAAGMTLAVDKLEELAQTLADYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVLAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFEEFDVRYKLKDLAVYLKIKDSLLVKMIQIFQELEFVTIADGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=838199 VF946_RS08010 WP_074389028.1 1557223..1559436(-) (recJ) [Streptococcus suis strain HB18]
GTGATAAAACCCAATTATGACTGGCAATTATTAACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGATCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTTCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACACATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTCACAGATGGCTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATCGAGCAACAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAAGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAAGGAAATTATCCTTTCAAACATTTGGCGGGCTGCGGTGTAGCCTTCAAATTGGCCTGTGCTCTTCTTG
AAACTGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTAACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCACTTCTCAAACAGACCGAACGTGCAGGCCTCCAAGAATTGATGAAAATAGCTGGCAT
TGATATGGATAGCCTTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCTAGGTTGAATGCCCTTGGTCGACTCGATGATC
CAAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCCCTCATGATTGACAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACAATGTTGCGTCGAGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAATCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTACACCAGCCTGTTGTCG
TCTTGTCGATTGAAGATGGTAAGGCAAAGGGGTCGGCTCGTTCTGTTGAAGCGGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTCTTTATCGCCTTTGGTGGTCATGCTAATGCAGCAGGTATGACCTTGGCGGTTGACAAACTTGAAGAGCT
TGCTCAAACCCTGGCTGACTACATTATCGAAAATAAATTGGATTTATCTAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTTTACATCAGAGACTTTCAGGTGGAATCAGCAAGAACCATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCTGGATTTGATGTCCTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAACAACATCCTATTCCTGCAGGGGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAACGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGAAGAGTTTGATGTTCGCTATAAACTGAAAGATTTGGCTGTTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTCACGATTGCGGATGGGGTCATGCGGGTCA
ACAAAGAGGCACAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.283

99.864

0.722
  recJ Bacillus subtilis subsp. subtilis str. 168

37.567

100

0.381