Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QN340_RS15225 Genome accession   NZ_CP126496
Coordinates   3066193..3066789 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus paralicheniformis strain DY4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3061193..3071789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN340_RS15185 (QN340_15185) - 3062215..3062721 (-) 507 WP_020451914.1 PTS glucose transporter subunit IIA -
  QN340_RS15190 (QN340_15190) - 3062894..3063313 (+) 420 WP_020451915.1 hypothetical protein -
  QN340_RS15195 (QN340_15195) - 3063332..3063778 (-) 447 WP_020451916.1 YppG family protein -
  QN340_RS15200 (QN340_15200) - 3063957..3064157 (+) 201 WP_011198064.1 YppF family protein -
  QN340_RS15205 (QN340_15205) - 3064190..3064561 (-) 372 WP_020451917.1 YppE family protein -
  QN340_RS15210 (QN340_15210) - 3064619..3064846 (-) 228 WP_020451918.1 YppD family protein -
  QN340_RS15215 (QN340_15215) sspM 3065046..3065150 (+) 105 WP_025811234.1 acid-soluble spore protein SspM -
  QN340_RS15220 (QN340_15220) - 3065180..3066112 (-) 933 WP_228119641.1 DUF2515 domain-containing protein -
  QN340_RS15225 (QN340_15225) recU 3066193..3066789 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  QN340_RS15230 (QN340_15230) - 3066847..3069522 (+) 2676 WP_020451920.1 PBP1A family penicillin-binding protein -
  QN340_RS15235 (QN340_15235) - 3069543..3070007 (-) 465 WP_044805006.1 YpoC family protein -
  QN340_RS15240 (QN340_15240) nth 3070043..3070705 (-) 663 WP_020451922.1 endonuclease III -
  QN340_RS15245 (QN340_15245) - 3070722..3071420 (-) 699 WP_020451923.1 DnaD domain protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=838164 QN340_RS15225 WP_003182896.1 3066193..3066789(+) (recU) [Bacillus paralicheniformis strain DY4]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=838164 QN340_RS15225 WP_003182896.1 3066193..3066789(+) (recU) [Bacillus paralicheniformis strain DY4]
GTGATTCGTTACCCGAACGGCAAATCGTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACTCCTGTACAGATTGTTCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTGATCAAGGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACGAAGAGCCGGACCTC
CTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAACAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833