Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QN340_RS13420 Genome accession   NZ_CP126496
Coordinates   2677004..2677432 (+) Length   142 a.a.
NCBI ID   WP_020451590.1    Uniprot ID   A0A6N2GRD1
Organism   Bacillus paralicheniformis strain DY4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2672004..2682432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN340_RS13390 (QN340_13390) - 2672260..2672868 (+) 609 WP_020451585.1 flavin reductase family protein -
  QN340_RS13395 (QN340_13395) wrbA 2673070..2673684 (+) 615 WP_020451586.1 NAD(P)H:quinone oxidoreductase -
  QN340_RS13400 (QN340_13400) - 2673995..2674135 (+) 141 WP_023857597.1 hypothetical protein -
  QN340_RS13405 (QN340_13405) - 2674128..2674961 (+) 834 WP_020451587.1 prohibitin family protein -
  QN340_RS13410 (QN340_13410) - 2675050..2675811 (+) 762 WP_041817207.1 hypothetical protein -
  QN340_RS13415 (QN340_13415) - 2675871..2676710 (+) 840 WP_026579651.1 thymidylate synthase -
  QN340_RS13420 (QN340_13420) nucA/comI 2677004..2677432 (+) 429 WP_020451590.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QN340_RS13425 (QN340_13425) lexA 2677631..2678254 (-) 624 WP_020451591.1 transcriptional repressor LexA -
  QN340_RS13430 (QN340_13430) yneA 2678406..2678717 (+) 312 WP_020451592.1 cell division suppressor protein YneA -
  QN340_RS13435 (QN340_13435) - 2678736..2679383 (+) 648 WP_020451593.1 recombinase family protein -
  QN340_RS13440 (QN340_13440) - 2679449..2679682 (+) 234 WP_020451594.1 DUF896 domain-containing protein -
  QN340_RS13445 (QN340_13445) tkt 2679846..2681849 (+) 2004 WP_020451595.1 transketolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15420.36 Da        Isoelectric Point: 7.8950

>NTDB_id=838163 QN340_RS13420 WP_020451590.1 2677004..2677432(+) (nucA/comI) [Bacillus paralicheniformis strain DY4]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDVLYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSDYADGTRILFIVR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=838163 QN340_RS13420 WP_020451590.1 2677004..2677432(+) (nucA/comI) [Bacillus paralicheniformis strain DY4]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTGCTGCTTGGGCTTTCGGGAGGGGCTGCATATTCTCC
TCAGCATGCCGAAGGCGCTGCAAGGTATGATGACGTATTGTATTTTCCGGCATCGCGCTATCCTGAAACAGGTGCTCATA
TAAGCGATGCGATCAAAGCGGGCCATTCAGATGTCTGCACAATTGAAAGATCTGGAGCGGATAAGCGCCGTCAGGAATCA
TTAAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGAAAAGGAGC
GTCGGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGATTACGCTGACG
GGACGAGAATTTTGTTTATCGTTCGATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N2GRD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

88.732

0.528