Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   VF946_RS00210 Genome accession   NZ_CP141824
Coordinates   28584..29366 (+) Length   260 a.a.
NCBI ID   WP_024405850.1    Uniprot ID   -
Organism   Streptococcus suis strain HB18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23584..34366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS00190 mreD 24432..24920 (+) 489 WP_009908846.1 rod shape-determining protein MreD -
  VF946_RS00195 pcsB 25005..26261 (+) 1257 WP_012774880.1 peptidoglycan hydrolase PcsB -
  VF946_RS00200 - 26364..27332 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  VF946_RS00205 - 27419..28597 (+) 1179 WP_024405849.1 pyridoxal phosphate-dependent aminotransferase -
  VF946_RS00210 recO 28584..29366 (+) 783 WP_024405850.1 DNA repair protein RecO Machinery gene
  VF946_RS00215 plsX 29363..30370 (+) 1008 WP_011921644.1 phosphate acyltransferase PlsX -
  VF946_RS00220 - 30363..30611 (+) 249 WP_011921645.1 phosphopantetheine-binding protein -
  VF946_RS00225 purC 30729..31436 (+) 708 WP_011921646.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30452.95 Da        Isoelectric Point: 5.4231

>NTDB_id=838136 VF946_RS00210 WP_024405850.1 28584..29366(+) (recO) [Streptococcus suis strain HB18]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYGDFIVKINDEGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=838136 VF946_RS00210 WP_024405850.1 28584..29366(+) (recO) [Streptococcus suis strain HB18]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGACGACAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGGGGATTTTATCGTTAAAATCAATGATGAAGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACTTACATCTTAGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTCTA
TGACCCAGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCAGGTTTGGACTACGAAGTTCTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATTAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCCATTTCCTTTGATGAGCTGGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.924

96.538

0.665