Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QN340_RS03285 Genome accession   NZ_CP126496
Coordinates   679729..680841 (+) Length   370 a.a.
NCBI ID   WP_003178089.1    Uniprot ID   A0A415J9T0
Organism   Bacillus paralicheniformis strain DY4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 674729..685841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN340_RS03260 (QN340_03260) rnpA 675457..675816 (-) 360 WP_020453656.1 ribonuclease P protein component -
  QN340_RS03265 (QN340_03265) rpmH 675901..676035 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  QN340_RS03270 (QN340_03270) dnaA 676675..678015 (+) 1341 WP_009330034.1 chromosomal replication initiator protein DnaA -
  QN340_RS03275 (QN340_03275) dnaN 678193..679329 (+) 1137 WP_020449764.1 DNA polymerase III subunit beta -
  QN340_RS03280 (QN340_03280) yaaA 679497..679712 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  QN340_RS03285 (QN340_03285) recF 679729..680841 (+) 1113 WP_003178089.1 DNA replication/repair protein RecF Machinery gene
  QN340_RS03290 (QN340_03290) - 680859..681101 (+) 243 WP_020449765.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  QN340_RS03295 (QN340_03295) gyrB 681162..683075 (+) 1914 WP_020449766.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QN340_RS03300 (QN340_03300) gyrA 683265..685739 (+) 2475 WP_020449767.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=838128 QN340_RS03285 WP_003178089.1 679729..680841(+) (recF) [Bacillus paralicheniformis strain DY4]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=838128 QN340_RS03285 WP_003178089.1 679729..680841(+) (recF) [Bacillus paralicheniformis strain DY4]
TTGTATATCCAAAATCTAACATTATCGTCTTACCGTAATTATGAACGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCCAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTTAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCAGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGCTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGTCAGCAGCGAACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTTTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACTTTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886