Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QOM09_RS25950 Genome accession   NZ_CP126474
Coordinates   5014679..5016028 (-) Length   449 a.a.
NCBI ID   WP_167091532.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain DHC4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5009679..5021028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM09_RS25915 (QOM09_25915) - 5009723..5010418 (-) 696 WP_053514256.1 hypothetical protein -
  QOM09_RS25920 (QOM09_25920) - 5010405..5011193 (-) 789 WP_053514255.1 hypothetical protein -
  QOM09_RS25925 (QOM09_25925) - 5011221..5011790 (-) 570 WP_001211057.1 hypothetical protein -
  QOM09_RS25930 (QOM09_25930) - 5011908..5012381 (-) 474 Protein_5043 hypothetical protein -
  QOM09_RS25935 (QOM09_25935) raiA 5012786..5013328 (-) 543 WP_000671186.1 ribosome-associated translation inhibitor RaiA -
  QOM09_RS25940 (QOM09_25940) cspC 5013651..5013848 (-) 198 WP_001990088.1 cold shock protein CspC -
  QOM09_RS25945 (QOM09_25945) - 5013975..5014679 (-) 705 WP_033668092.1 ComF family protein -
  QOM09_RS25950 (QOM09_25950) comFA 5014679..5016028 (-) 1350 WP_167091532.1 ATP-dependent helicase ComFA Machinery gene
  QOM09_RS25955 (QOM09_25955) - 5016156..5017583 (-) 1428 WP_053514254.1 C40 family peptidase -
  QOM09_RS25960 (QOM09_25960) - 5017732..5018046 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  QOM09_RS25965 (QOM09_25965) - 5018219..5019061 (-) 843 WP_002103834.1 DegV family protein -
  QOM09_RS25970 (QOM09_25970) - 5019298..5019933 (+) 636 WP_284558994.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51078.97 Da        Isoelectric Point: 9.9833

>NTDB_id=838103 QOM09_RS25950 WP_167091532.1 5014679..5016028(-) (comFA) [Bacillus thuringiensis strain DHC4]
MLAGKQLLLEELSSDLQRELNDLKKRGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCAYCRKCITMGRVS
ECAVLVRGIAERKREKNLNLLQWNGTLSTGQNLAAQGVIEAIRQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYVKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIVSGRYHRHPLPVPLFCWCGNWKKNLIHKRIPRVLLQWLQTYLNKKFPIFL
FVPHVRYIEEISLLLKPLNNRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=838103 QOM09_RS25950 WP_167091532.1 5014679..5016028(-) (comFA) [Bacillus thuringiensis strain DHC4]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAGGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCGCATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAACTTGTTACAGTGGAACGGTACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAGGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGAATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATGTAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCGTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTGTTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
ACCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAATTCCCTATTTTTTTA
TTCGTCCCCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACCATTAAACAATCGAATTGAAGGTGTACATGC
AGAAGATCCAGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTCGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(108-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.131

98.441

0.503
  comFA Latilactobacillus sakei subsp. sakei 23K

41.439

89.755

0.372