Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QOM09_RS12170 Genome accession   NZ_CP126474
Coordinates   2335123..2335401 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus thuringiensis strain DHC4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2330123..2340401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM09_RS12150 (QOM09_12150) - 2331799..2332608 (+) 810 WP_000678509.1 papain-like cysteine protease family protein -
  QOM09_RS12155 (QOM09_12155) - 2332634..2333236 (+) 603 WP_053513524.1 hypothetical protein -
  QOM09_RS12160 (QOM09_12160) - 2333477..2333728 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  QOM09_RS12165 (QOM09_12165) - 2334105..2334982 (+) 878 Protein_2319 helix-turn-helix domain-containing protein -
  QOM09_RS12170 (QOM09_12170) abrB 2335123..2335401 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QOM09_RS12180 (QOM09_12180) - 2337358..2338608 (+) 1251 WP_001032363.1 hypothetical protein -
  QOM09_RS12185 (QOM09_12185) - 2338676..2339434 (+) 759 WP_000347986.1 TSUP family transporter -
  QOM09_RS12190 (QOM09_12190) - 2339688..2340347 (+) 660 WP_000682538.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=838082 QOM09_RS12170 WP_000842216.1 2335123..2335401(+) (abrB) [Bacillus thuringiensis strain DHC4]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=838082 QOM09_RS12170 WP_000842216.1 2335123..2335401(+) (abrB) [Bacillus thuringiensis strain DHC4]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCCAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489