Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QOM09_RS10000 Genome accession   NZ_CP126474
Coordinates   1918099..1918386 (+) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus thuringiensis strain DHC4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1913099..1923386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM09_RS09980 (QOM09_09980) - 1914275..1914472 (+) 198 WP_001048102.1 DUF4083 domain-containing protein -
  QOM09_RS09985 (QOM09_09985) - 1914504..1914965 (+) 462 WP_000024999.1 NUDIX hydrolase -
  QOM09_RS09990 (QOM09_09990) nadE 1915015..1915833 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  QOM09_RS09995 (QOM09_09995) - 1916103..1917983 (+) 1881 WP_001026002.1 ABC transporter permease -
  QOM09_RS10000 (QOM09_10000) abrB 1918099..1918386 (+) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QOM09_RS10005 (QOM09_10005) - 1918661..1919608 (+) 948 WP_000099753.1 serine protease -
  QOM09_RS10010 (QOM09_10010) - 1919650..1919958 (-) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  QOM09_RS10015 (QOM09_10015) - 1920065..1921000 (+) 936 WP_053512685.1 aldo/keto reductase -
  QOM09_RS10020 (QOM09_10020) - 1921051..1922226 (+) 1176 WP_053512686.1 MFS transporter -
  QOM09_RS30740 - 1922275..1922481 (+) 207 WP_001101741.1 hypothetical protein -
  QOM09_RS10025 (QOM09_10025) - 1922625..1922987 (+) 363 WP_001198794.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=838080 QOM09_RS10000 WP_000648325.1 1918099..1918386(+) (abrB) [Bacillus thuringiensis strain DHC4]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=838080 QOM09_RS10000 WP_000648325.1 1918099..1918386(+) (abrB) [Bacillus thuringiensis strain DHC4]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGTATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526