Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QOM09_RS06605 Genome accession   NZ_CP126474
Coordinates   1261213..1261536 (-) Length   107 a.a.
NCBI ID   WP_053513383.1    Uniprot ID   A0A9X6Q1W0
Organism   Bacillus thuringiensis strain DHC4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256213..1266536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM09_RS06580 (QOM09_06580) - 1256575..1257861 (+) 1287 WP_053513392.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QOM09_RS06585 (QOM09_06585) - 1258059..1258628 (+) 570 WP_000767792.1 signal peptidase I -
  QOM09_RS06590 (QOM09_06590) - 1258689..1259276 (+) 588 WP_000172854.1 CalY family protein -
  QOM09_RS06595 (QOM09_06595) - 1259411..1260199 (+) 789 WP_053513390.1 DUF4047 domain-containing protein -
  QOM09_RS06600 (QOM09_06600) calY 1260553..1261146 (+) 594 WP_053513385.1 biofilm matrix protein CalY -
  QOM09_RS06605 (QOM09_06605) sinR 1261213..1261536 (-) 324 WP_053513383.1 helix-turn-helix domain-containing protein Regulator
  QOM09_RS06610 (QOM09_06610) - 1261616..1261750 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  QOM09_RS06615 (QOM09_06615) inhA1 1262093..1264483 (+) 2391 WP_001035946.1 M6 family metalloprotease immune inhibitor InhA1 -
  QOM09_RS06620 (QOM09_06620) - 1264655..1266022 (+) 1368 WP_000028382.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12308.14 Da        Isoelectric Point: 9.6244

>NTDB_id=838077 QOM09_RS06605 WP_053513383.1 1261213..1261536(-) (sinR) [Bacillus thuringiensis strain DHC4]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETSLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=838077 QOM09_RS06605 WP_053513383.1 1261213..1261536(-) (sinR) [Bacillus thuringiensis strain DHC4]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAATTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAGCCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682