Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QLQ03_RS19120 Genome accession   NZ_CP126456
Coordinates   3720930..3721565 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain KRS010     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3715930..3726565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS19080 - 3716092..3717210 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  QLQ03_RS19085 - 3717262..3717768 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  QLQ03_RS19090 - 3717937..3718356 (+) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  QLQ03_RS19095 - 3718378..3718830 (-) 453 WP_017359729.1 YppG family protein -
  QLQ03_RS19100 - 3718939..3719310 (-) 372 WP_017359730.1 YppE family protein -
  QLQ03_RS19105 - 3719369..3719605 (-) 237 WP_008344612.1 DUF5446 family protein -
  QLQ03_RS19110 sspM 3719799..3719903 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  QLQ03_RS19115 - 3719927..3720883 (-) 957 WP_017359732.1 DUF2515 domain-containing protein -
  QLQ03_RS19120 recU 3720930..3721565 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  QLQ03_RS19125 - 3721585..3724257 (+) 2673 WP_017359734.1 PBP1A family penicillin-binding protein -
  QLQ03_RS19130 - 3724293..3724802 (-) 510 WP_079920154.1 YpoC family protein -
  QLQ03_RS19135 nth 3724799..3725461 (-) 663 WP_008344602.1 endonuclease III -
  QLQ03_RS19140 - 3725479..3726183 (-) 705 WP_242730600.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=837933 QLQ03_RS19120 WP_017359733.1 3720930..3721565(+) (recU) [Bacillus altitudinis strain KRS010]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=837933 QLQ03_RS19120 WP_017359733.1 3720930..3721565(+) (recU) [Bacillus altitudinis strain KRS010]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697