Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QLQ03_RS17705 Genome accession   NZ_CP126456
Coordinates   3445381..3445761 (+) Length   126 a.a.
NCBI ID   WP_240504399.1    Uniprot ID   -
Organism   Bacillus altitudinis strain KRS010     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3440381..3450761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS17695 - 3442100..3443008 (+) 909 WP_017359587.1 trypsin-like serine protease -
  QLQ03_RS17700 - 3443155..3445149 (+) 1995 WP_242730473.1 glycosyltransferase family 39 protein -
  QLQ03_RS17705 nucA/comI 3445381..3445761 (+) 381 WP_240504399.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QLQ03_RS17710 - 3445905..3446753 (+) 849 WP_017359585.1 STAS domain-containing protein -
  QLQ03_RS17715 - 3446786..3447328 (-) 543 WP_007499353.1 IseA DL-endopeptidase inhibitor family protein -
  QLQ03_RS17720 - 3447625..3448068 (+) 444 WP_008343821.1 hypothetical protein -
  QLQ03_RS17725 lexA 3448116..3448736 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  QLQ03_RS17730 yneA 3448896..3449207 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  QLQ03_RS17735 - 3449225..3449872 (+) 648 WP_017359583.1 recombinase family protein -
  QLQ03_RS17740 - 3449942..3450172 (+) 231 WP_024719088.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13742.43 Da        Isoelectric Point: 8.4955

>NTDB_id=837932 QLQ03_RS17705 WP_240504399.1 3445381..3445761(+) (nucA/comI) [Bacillus altitudinis strain KRS010]
MGVLLGGFGEGRSAKGADRYEHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=837932 QLQ03_RS17705 WP_240504399.1 3445381..3445761(+) (nucA/comI) [Bacillus altitudinis strain KRS010]
ATGGGTGTGTTATTAGGTGGTTTTGGAGAGGGTCGTTCCGCAAAAGGAGCAGATCGTTATGAACATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.143

94.444

0.54