Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QLQ03_RS16010 Genome accession   NZ_CP126456
Coordinates   3099584..3099862 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain KRS010     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3094584..3104862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS15985 - 3094675..3094950 (-) 276 WP_284565065.1 hypothetical protein -
  QLQ03_RS15990 - 3095095..3096714 (+) 1620 WP_019743117.1 ATP-binding cassette domain-containing protein -
  QLQ03_RS15995 - 3096755..3097987 (-) 1233 WP_046527027.1 aminopeptidase -
  QLQ03_RS16000 - 3098094..3098225 (-) 132 WP_003210922.1 protein YkpC -
  QLQ03_RS16005 mreBH 3098300..3099307 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  QLQ03_RS16010 abrB 3099584..3099862 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QLQ03_RS16015 - 3100007..3101296 (+) 1290 WP_007498613.1 ATP-binding protein -
  QLQ03_RS16020 - 3101324..3102166 (+) 843 WP_081114458.1 gamma-glutamylcyclotransferase family protein -
  QLQ03_RS16025 - 3102204..3102872 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=837927 QLQ03_RS16010 WP_017359400.1 3099584..3099862(+) (abrB) [Bacillus altitudinis strain KRS010]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=837927 QLQ03_RS16010 WP_017359400.1 3099584..3099862(+) (abrB) [Bacillus altitudinis strain KRS010]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543