Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QLQ03_RS13925 Genome accession   NZ_CP126456
Coordinates   2719440..2720018 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain KRS010     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2714440..2725018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS13905 - 2714933..2716228 (-) 1296 WP_007497200.1 globin-coupled sensor protein -
  QLQ03_RS13910 - 2716320..2717852 (-) 1533 WP_008348809.1 FAD-dependent oxidoreductase -
  QLQ03_RS13915 - 2717995..2718855 (+) 861 WP_008348806.1 SDR family oxidoreductase -
  QLQ03_RS13920 - 2718914..2719150 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  QLQ03_RS13925 comK 2719440..2720018 (+) 579 WP_017366958.1 competence protein ComK Regulator
  QLQ03_RS13930 - 2720162..2721268 (+) 1107 WP_079919114.1 alanine racemase -
  QLQ03_RS13935 - 2721570..2722052 (+) 483 WP_046343108.1 hypothetical protein -
  QLQ03_RS13940 - 2722083..2723522 (-) 1440 WP_171465157.1 PLP-dependent aminotransferase family protein -
  QLQ03_RS13945 - 2723666..2724835 (+) 1170 WP_048001723.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=837912 QLQ03_RS13925 WP_017366958.1 2719440..2720018(+) (comK) [Bacillus altitudinis strain KRS010]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=837912 QLQ03_RS13925 WP_017366958.1 2719440..2720018(+) (comK) [Bacillus altitudinis strain KRS010]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAATTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615