Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QLQ03_RS08995 Genome accession   NZ_CP126456
Coordinates   1724205..1724495 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain KRS010     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719205..1729495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS08955 - 1719238..1719567 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  QLQ03_RS08960 - 1719580..1720020 (+) 441 WP_035391564.1 YaaR family protein -
  QLQ03_RS08965 holB 1720032..1721021 (+) 990 WP_007496231.1 DNA polymerase III subunit delta' -
  QLQ03_RS08970 - 1721024..1721851 (+) 828 WP_007496230.1 stage 0 sporulation family protein -
  QLQ03_RS08975 yabA 1721866..1722219 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  QLQ03_RS08980 - 1722275..1723018 (+) 744 WP_039962495.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QLQ03_RS08985 - 1723005..1723304 (+) 300 WP_046342410.1 GIY-YIG nuclease family protein -
  QLQ03_RS08990 rsmI 1723279..1724160 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QLQ03_RS08995 abrB 1724205..1724495 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QLQ03_RS09000 metG 1725015..1727015 (+) 2001 WP_041506541.1 methionine--tRNA ligase -
  QLQ03_RS09005 - 1727097..1727864 (+) 768 WP_017359325.1 TatD family hydrolase -
  QLQ03_RS09010 - 1728109..1729311 (+) 1203 WP_007496219.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=837903 QLQ03_RS08995 WP_087975202.1 1724205..1724495(-) (abrB) [Bacillus altitudinis strain KRS010]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=837903 QLQ03_RS08995 WP_087975202.1 1724205..1724495(-) (abrB) [Bacillus altitudinis strain KRS010]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938