Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QLQ03_RS01305 Genome accession   NZ_CP126456
Coordinates   229082..229852 (-) Length   256 a.a.
NCBI ID   WP_284565118.1    Uniprot ID   -
Organism   Bacillus altitudinis strain KRS010     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 224082..234852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ03_RS01285 - 224175..224996 (-) 822 WP_108611178.1 pyruvate, water dikinase regulatory protein -
  QLQ03_RS01290 - 225022..225660 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  QLQ03_RS01295 glyS 225827..227872 (-) 2046 WP_046344006.1 glycine--tRNA ligase subunit beta -
  QLQ03_RS01300 glyQ 227865..228752 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  QLQ03_RS01305 recO 229082..229852 (-) 771 WP_284565118.1 DNA repair protein RecO Machinery gene
  QLQ03_RS01310 - 229888..230031 (-) 144 WP_008342408.1 YqzL family protein -
  QLQ03_RS01315 era 230179..231084 (-) 906 WP_007501305.1 GTPase Era -
  QLQ03_RS01320 - 231077..231475 (-) 399 WP_008342410.1 cytidine deaminase -
  QLQ03_RS01325 - 231588..231974 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  QLQ03_RS01330 ybeY 231952..232431 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  QLQ03_RS01335 - 232432..234522 (-) 2091 WP_173408463.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29389.10 Da        Isoelectric Point: 8.4348

>NTDB_id=837877 QLQ03_RS01305 WP_284565118.1 229082..229852(-) (recO) [Bacillus altitudinis strain KRS010]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQAEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCSQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=837877 QLQ03_RS01305 WP_284565118.1 229082..229852(-) (recO) [Bacillus altitudinis strain KRS010]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGCTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCAGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754