Detailed information NTG0837855

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VA243_RS00380
• Genome accession: NZ_CP141774
• Coordinates: 76071..78641 (+)
• Length: 856 a.a.
• NCBI ID: WP_324714716.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P07353
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 71071..83641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA243_RS00355	xseA	71301..72563 (+)	1263	WP_324714713.1	exodeoxyribonuclease VII large subunit	-
VA243_RS00360	-	72582..73736 (-)	1155	WP_324715142.1	site-specific DNA-methyltransferase	-
VA243_RS00365	-	73747..74361 (-)	615	WP_324714714.1	hypothetical protein	-
VA243_RS00370	-	74555..75244 (+)	690	Protein_71	BsaWI family type II restriction enzyme	-
VA243_RS00375	-	75241..75999 (+)	759	WP_324714715.1	site-specific DNA-methyltransferase	-
VA243_RS00380	clpC	76071..78641 (+)	2571	WP_324714716.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
VA243_RS00385	-	78698..79417 (+)	720	WP_324715143.1	cytochrome c biogenesis protein CcdA	-
VA243_RS00390	-	79427..80563 (+)	1137	WP_324714717.1	dihydroorotase family protein	-
VA243_RS00395	mqnF	80548..81777 (+)	1230	WP_324714718.1	aminofutalosine deaminase	-
VA243_RS00400	-	81839..82081 (+)	243	WP_000780041.1	nuclease	-
VA243_RS00405	miaB	82091..83404 (+)	1314	WP_324714719.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96562.45 Da
• Isoelectric Point: 6.1470

>NTDB_id=837855 VA243_RS00380 WP_324714716.1 76071..78641(+) (clpC) [Helicobacter pylori strain P07353]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKLAKVSQINK
QNIQLNQALIQSLENAQGLMAKMGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLEALRKGTTIQGKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEVQFENEKEVFREISRLKMETESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQRKWEVMQQNGALLQNALSENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGALLEENLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAVANIVGILFENIQKKALERGINITLDEEAKEL
IAEVGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK

Nucleotide

• Length: 2571 bp

>NTDB_id=837855 VA243_RS00380 WP_324714716.1 76071..78641(+) (clpC) [Helicobacter pylori strain P07353]
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTCTAGCCTTACACCATAAAAA
CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTCAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA
TGTCTGTGGATATTCAAGCCTTGAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTGGCTAAAGTTTCACAAATCAACAAG
CAAAACATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAATGGGCGATTCTTT
CATCGCTACAGATGTGTATCTTTTGGCGAACATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAGGCTTTGAGGAAGGGCACGACTATCCAAGGTAAAAACGATGATTCTAATTTGGAGAGTTTGGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCCTAGAAAATAAGCTCGATCCGGTGATTGGGAGGGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTATTGGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG
TGGAGGGTTTGGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATTTA
AGTTTGTTGGTGGCTGGAGCCAAATACAGAGGCGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAGGTTAAAAAAAG
CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGAGCGAGTGAGGGGGGCATGGATGCGGCTA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTGAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCGCTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAGGCTTTACAGATTTT
AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTCATAGCGAGCGCCAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGACAAGGCGATTGATTTGATTGATGAGGGGGCGGCCCAATTGAAAATG
CAAATGGAATCCGAGCCGGCAAAACTCTCTAGCGTTAAGCGCTCTATTCAAAGATTAGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC
AATTAGAAGTGCAATTTGAGAACGAAAAAGAAGTGTTTAGAGAAATTTCACGCTTGAAAATGGAAACCGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAACAA
AAAGAAAGAAGAAGAATTGCAGCGCAAATGGGAAGTCATGCAACAAAACGGGGCGTTATTGCAAAACGCTTTAAGCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATCCCGGTCCAAAAAATGCTCCAGAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGTTTTCTCTTTTTGGGGCCAACGGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGACATGAGCGAATACATGGAAAAA
CATGCCATAAGCCGTCTTATTGGAGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG
CAGAAAACCCTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAATCTTTTGTTGCAGGTTT
TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGGCGCGCTTTTGGAAGAGAATTTGAGTGAAGCCGATAAACAAAAAGCGATTAAAGAGAGCTTGAGGCAATTCTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAGATCATCTCCTTTAACGCTCTAGATAGCCATGCTGTCGCTAATATCGTGG
GGATTCTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAGAGGCAAAAGAATTG
ATCGCTGAAGTGGGATTTGACAGATTCTATGGCGCTAGACCCTTAAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAGATTAAAGAAAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAAATTGTGCCTA
AGATTAAGTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

• AAA lid domain (AAA_lid_9) (339-440)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-142)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.643	100	0.445
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.09	100	0.423