Detailed information NTG0837838

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VA210_RS04520
• Genome accession: NZ_CP141773
• Coordinates: 927649..930219 (-)
• Length: 856 a.a.
• NCBI ID: WP_324713363.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P08205
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 922649..935219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA210_RS04495	miaB	922888..924201 (-)	1314	WP_324713359.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
VA210_RS04500	-	924211..924453 (-)	243	WP_000780041.1	nuclease	-
VA210_RS04505	mqnF	924514..925743 (-)	1230	WP_324713360.1	aminofutalosine deaminase	-
VA210_RS04510	-	925728..926864 (-)	1137	WP_324713361.1	dihydroorotase family protein	-
VA210_RS04515	-	926874..927593 (-)	720	WP_324713362.1	cytochrome c biogenesis protein CcdA	-
VA210_RS04520	clpC	927649..930219 (-)	2571	WP_324713363.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
VA210_RS04525	-	930291..931049 (-)	759	WP_000806059.1	DNA-methyltransferase	-
VA210_RS04530	-	931046..931693 (-)	648	WP_324713364.1	BsaWI family type II restriction enzyme	-
VA210_RS04535	xseA	931941..933203 (-)	1263	WP_324713365.1	exodeoxyribonuclease VII large subunit	-
VA210_RS04540	rseP	933216..934262 (-)	1047	WP_324714192.1	RIP metalloprotease RseP	-
VA210_RS04545	-	934262..934921 (-)	660	WP_324713366.1	MotE family protein	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96486.30 Da
• Isoelectric Point: 6.3261

>NTDB_id=837838 VA210_RS04520 WP_324713363.1 927649..930219(-) (clpC) [Helicobacter pylori strain P08205]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKLAKVSQINK
QNIQLNQALIQSLENAQGLMAKIGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLESLRKGATIQSKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFREISRLKMETESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK
HAVSRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGTLLEENLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAVANIVGILFENIQKKALERGINITLDEEAKEL
IAKAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK

Nucleotide

• Length: 2571 bp

>NTDB_id=837838 VA210_RS04520 WP_324713363.1 927649..930219(-) (clpC) [Helicobacter pylori strain P08205]
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAAACTTTAGACAGCGCGCTCGCTCTAGCCTTACACCATAAAAA
CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTCAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA
TGTCTGTGGATATTCAAGCCTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTGGCTAAAGTTTCACAAATCAACAAG
CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTGATGGCTAAAATTGGCGATTCTTT
CATCGCTACAGATGTGTATCTTTTGGCGAACATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAATCTTTGAGGAAGGGCGCGACTATCCAAAGTAAAAACGATGATTCTAATTTGGAAAGTTTGGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTCGATCCGGTGATTGGGAGGGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG
TGGAGGGTTTGGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATCTA
AGCTTATTGGTGGCTGGAGCGAAATACAGAGGTGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTGAAAAAAAG
CGCGAATGTGATTTTATTTATTGATGAAATCCACACGATTGTAGGGGCTGGGGCTAGTGAGGGGGGCATGGATGCGGCTA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTCTGAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCACTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAGGCTTTACAGATTTT
AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTCATAGCGAGCGCTAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCCCAATTAAAAATG
CAAATGGAATCCGAGCCGGCAAAACTTTCCAGCGTTAAACGCTCCATTCAAAGACTGGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC
AATTAGAAGCGCAATTTGAGAACGAAAAAGAAGTGTTTAGAGAAATTTCACGCTTGAAAATGGAAACGGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAAGAATTGCAACACAAGTGGGAAGCGATGCAACAAAACGGGGCGTTATTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATCCCGGTCCAAAAAATGCTTCAGAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCAATCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGCTTTCTCTTTTTGGGGCCAACGGGCGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGACATGAGCGAATACATGGAAAAA
CATGCCGTAAGCCGTCTTATTGGGGCTGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG
CAGAAAACCCTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAATCTTTTATTGCAGGTTT
TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGGCACGCTTTTGGAAGAAAATTTGAGTGAAGCCGATAAACAAAAAGCGATTAAAGAGAGCTTGAGGCAATTCTT
CAAGCCGGAATTTTTAAACCGCTTAGACGAAATCATCTCCTTTAACGCTCTAGATAGTCATGCTGTCGCTAATATCGTGG
GGATTCTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGAGGCATTAATATCACCCTAGACGAAGAGGCAAAAGAATTG
ATCGCCAAAGCGGGATTTGACAGATTTTATGGCGCTAGACCTTTGAAGCGTGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAAATTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAAATTGTGCCTA
AGATTAAGTGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (339-440)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-142)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	42.726	100	0.436
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.27	100	0.425
clpE	Streptococcus mutans UA159	43.954	82.126	0.361