Detailed information NTG0837804

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VA211_RS05940
• Genome accession: NZ_CP141771
• Coordinates: 1219007..1221577 (-)
• Length: 856 a.a.
• NCBI ID: WP_324684703.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P08204
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1214007..1226577

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA211_RS05915	miaB	1214246..1215559 (-)	1314	WP_324684694.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
VA211_RS05920	-	1215569..1215811 (-)	243	WP_000780041.1	nuclease	-
VA211_RS05925	mqnF	1215872..1217101 (-)	1230	WP_324684697.1	aminofutalosine deaminase	-
VA211_RS05930	-	1217086..1218222 (-)	1137	WP_324684699.1	dihydroorotase family protein	-
VA211_RS05935	-	1218232..1218951 (-)	720	WP_324684701.1	cytochrome c biogenesis protein CcdA	-
VA211_RS05940	clpC	1219007..1221577 (-)	2571	WP_324684703.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
VA211_RS05945	-	1221648..1222406 (-)	759	WP_324684705.1	site-specific DNA-methyltransferase	-
VA211_RS05950	-	1222403..1223050 (-)	648	WP_324684706.1	BsaWI family type II restriction enzyme	-
VA211_RS05955	-	1223276..1223890 (+)	615	WP_014662202.1	hypothetical protein	-
VA211_RS05960	-	1223901..1225055 (+)	1155	WP_324686400.1	site-specific DNA-methyltransferase	-
VA211_RS05965	xseA	1225074..1226336 (-)	1263	WP_324684710.1	exodeoxyribonuclease VII large subunit	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 96443.25 Da
• Isoelectric Point: 6.1140

>NTDB_id=837804 VA211_RS05940 WP_324684703.1 1219007..1221577(-) (clpC) [Helicobacter pylori strain P08204]
MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKLAKVSQINK
QNIQLNQALIQSLENAQGLMAKMGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLEALRKGATIQGKNDDSNLESLE
KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL
SLLVAGAKYRGEFEERLKKVIEEVKKSANVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF
EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM
QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNAKRMQEILKELSDLKEEKIQLEAQFENEKEVFREISRLKMETESLK
KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL
NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK
HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV
ASGALLEENLSEADKQKAVKESLRQFFKPEFLNRLDEIISFNALDSHAVANIVGILFENIQKKALERGINITLDEEAKEL
IAEVGFDRFYGARPLKRALYEMVEDKLAELILEDKVKENDSVAFVVENNEIVPKIK

Nucleotide

• Length: 2571 bp

>NTDB_id=837804 VA211_RS05940 WP_324684703.1 1219007..1221577(-) (clpC) [Helicobacter pylori strain P08204]
ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTCTAGCCTTACACCATAAAAA
CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTCAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA
TGTCTGTGGATATTCAAGCCTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTGGCTAAAGTTTCACAAATCAACAAG
CAAAATATCCAATTAAACCAGGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTAATGGCTAAAATGGGCGATTCTTT
CATCGCTACAGATGTGTATCTTTTGGCGAACATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAGGAAT
TGCAAAAAACTTTAGAGGCTTTGAGGAAGGGCGCGACTATCCAAGGTAAAAACGATGATTCTAATTTGGAAAGTTTGGAA
AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTCGATCCGGTGATTGGGAGGGATGAAGAAATCATTCG
CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG
TGGAGGGTTTGGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATTTA
AGCTTATTGGTGGCTGGAGCCAAATACAGAGGCGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTGAAAAAAAG
CGCGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGAGCGAGTGAGGGGGGCATGGATGCGGCTA
ATATTTTAAAACCCGCGCTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTGAAAGAATACCGCAAGTATTTT
GAAAAAGACATGGCGCTACAAAGGCGTTTCCAACCTATTTTACTCAATGAGCCTAGCATCAATGAGGCTTTACAGATTTT
AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACTATCAATGACTCCGCGCTTATAGCGAGCGCTAAACTCT
CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCCCAATTAAAAATG
CAAATGGAATCCGAGCCGGCAAAGCTCTCTAGCGTTAAGCGCTCTATTCAAAGATTGGAAATGGAAAAACAAGCCCTTGA
AATGGAAAAAAAAGAGAGCAATGCCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC
AATTAGAAGCGCAATTTGAGAACGAAAAAGAAGTGTTTAGAGAAATTTCACGCTTGAAAATGGAAACCGAAAGCTTGAAA
AAAGAGGCTGAGAGGTTTAAGCGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA
AAAGAAAGAAGAAGAATTGCAGCATAAATGGGAAGCGATGCAACAAAACGGGGCGTTGTTGCAAAACGCTTTAACCGAAA
ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATCCCGGTCCAAAAAATGCTTCAGAGCGAAAAAAATAGGGTTTTA
AACATTGAAAGCGAATTGCAAAAAAGAGTGGTAGGGCAAGAAAAAGCGATCAAAGCGATCGCTAAAGCGATTAAAAGGAA
TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGCTTTCTCTTTTTAGGGCCAACGGGTGTGGGTAAAACCGAGA
GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGACATGAGCGAATACATGGAAAAA
CATGCCATAAGCCGTCTTATTGGGGCCGCTCCTGGGTATGTGGGCTATGAAGAAGGCGGGCAATTGACCGAAGCGGTGCG
CAGAAAACCCTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAACCTTTTGTTGCAGGTTT
TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGGGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG
GCTAGCGGTGCGCTTTTAGAAGAAAATTTGAGTGAAGCCGATAAACAAAAAGCGGTTAAAGAGAGCTTGAGGCAATTCTT
CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGCCATGCTGTCGCTAATATCGTGG
GGATTCTCTTTGAGAACATTCAAAAAAAAGCGCTTGAAAGGGGCATTAATATAACCCTAGACGAAGAGGCAAAAGAATTG
ATCGCTGAAGTGGGATTTGACAGATTTTATGGCGCTAGACCCTTGAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT
CGCTGAACTCATTTTAGAGGATAAAGTTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAAATTGTGCCTA
AGATTAAGTGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (339-440)

• ATPase family associated with various cellular activities (AAA) (AAA) (201-316)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-142)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (764-842)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	42.955	100	0.438
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	40.976	100	0.422