Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   VA211_RS01535 Genome accession   NZ_CP141771
Coordinates   293685..294734 (-) Length   349 a.a.
NCBI ID   WP_324685616.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08204     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 288685..299734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA211_RS01515 rpsL 289442..289849 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  VA211_RS01520 rpsG 289865..290332 (+) 468 WP_001254365.1 30S ribosomal protein S7 -
  VA211_RS01525 fusA 290344..292422 (+) 2079 WP_000101843.1 elongation factor G -
  VA211_RS01530 - 293223..293492 (+) 270 WP_000940560.1 hypothetical protein -
  VA211_RS01535 waaF 293685..294734 (-) 1050 WP_324685616.1 lipopolysaccharide heptosyltransferase II Regulator
  VA211_RS01540 hisS 294796..296124 (+) 1329 WP_324685619.1 histidine--tRNA ligase -
  VA211_RS01545 asd 296111..297151 (+) 1041 WP_324685622.1 aspartate-semialdehyde dehydrogenase -
  VA211_RS01550 - 297582..298883 (+) 1302 WP_324685625.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39439.20 Da        Isoelectric Point: 9.7445

>NTDB_id=837781 VA211_RS01535 WP_324685616.1 293685..294734(-) (waaF) [Helicobacter pylori strain P08204]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNARFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLSNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIISAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAALLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLSN
NAYNLCGKTSIEELIERIATLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETHPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=837781 VA211_RS01535 WP_324685616.1 293685..294734(-) (waaF) [Helicobacter pylori strain P08204]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCGTTTTATCTTAGTAGGTCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAGCAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATTTCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACTCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGCTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTCTAAAACTCATTAAAGGCTTATTAAAAAACCCCTTATTATCCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTACTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCGCACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAAA
CTCACCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTGAGCTGTTCGCCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364