Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VLJ87_RS28300 Genome accession   NZ_CP141770
Coordinates   6132668..6133033 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PA14-GFP     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6127668..6138033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VLJ87_RS28285 pilK 6129012..6129887 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  VLJ87_RS28290 pilJ 6129948..6131996 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  VLJ87_RS28295 - 6132081..6132617 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  VLJ87_RS28300 pilH 6132668..6133033 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  VLJ87_RS28305 pilG 6133080..6133487 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  VLJ87_RS28310 gshB 6133742..6134695 (+) 954 WP_003100943.1 glutathione synthase -
  VLJ87_RS28315 - 6134842..6135735 (+) 894 WP_003084580.1 TonB family protein -
  VLJ87_RS28320 - 6135784..6136353 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  VLJ87_RS28325 ruvX 6136353..6136787 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  VLJ87_RS28330 pyrR 6136899..6137411 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=837768 VLJ87_RS28300 WP_003084587.1 6132668..6133033(-) (pilH) [Pseudomonas aeruginosa strain PA14-GFP]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=837768 VLJ87_RS28300 WP_003084587.1 6132668..6133033(-) (pilH) [Pseudomonas aeruginosa strain PA14-GFP]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364