Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   VLJ87_RS19955 Genome accession   NZ_CP141770
Coordinates   4348080..4348436 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain PA14-GFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4343080..4353436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VLJ87_RS19930 - 4343446..4344078 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  VLJ87_RS19935 - 4344143..4345039 (-) 897 WP_003091113.1 radical SAM protein -
  VLJ87_RS19940 - 4345206..4345844 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  VLJ87_RS19945 - 4345930..4347063 (+) 1134 WP_003138612.1 aminotransferase class V-fold PLP-dependent enzyme -
  VLJ87_RS19950 - 4347289..4348065 (-) 777 WP_003091117.1 TatD family hydrolase -
  VLJ87_RS19955 pilZ 4348080..4348436 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  VLJ87_RS19960 - 4348470..4349456 (-) 987 WP_003138609.1 DNA polymerase III subunit delta' -
  VLJ87_RS19965 tmk 4349449..4350081 (-) 633 WP_003138599.1 dTMP kinase -
  VLJ87_RS19970 mltG 4350110..4351159 (-) 1050 WP_003091127.1 endolytic transglycosylase MltG -
  VLJ87_RS19975 pabC 4351165..4351980 (-) 816 WP_003091129.1 aminodeoxychorismate lyase -
  VLJ87_RS19980 fabF 4351980..4353224 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=837745 VLJ87_RS19955 WP_003091119.1 4348080..4348436(-) (pilZ) [Pseudomonas aeruginosa strain PA14-GFP]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=837745 VLJ87_RS19955 WP_003091119.1 4348080..4348436(-) (pilZ) [Pseudomonas aeruginosa strain PA14-GFP]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449