Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   bsdtb5_RS16360 Genome accession   NZ_AP024169
Coordinates   3770750..3772603 (-) Length   617 a.a.
NCBI ID   WP_271713045.1    Uniprot ID   A0A7R7IFB1
Organism   Anaeromicropila herbilytica strain TB5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3765750..3777603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bsdtb5_RS16335 (bsdtb5_32480) - 3766275..3766925 (-) 651 WP_271713040.1 hypothetical protein -
  bsdtb5_RS16340 (bsdtb5_32490) - 3766962..3768608 (-) 1647 WP_271713041.1 recombinase family protein -
  bsdtb5_RS16345 (bsdtb5_32500) - 3768601..3768726 (-) 126 WP_271713042.1 hypothetical protein -
  bsdtb5_RS16350 (bsdtb5_32510) - 3768959..3769501 (-) 543 WP_271713043.1 hydrolase -
  bsdtb5_RS16355 (bsdtb5_32520) - 3769782..3770420 (+) 639 WP_271713044.1 MBL fold metallo-hydrolase -
  bsdtb5_RS16360 (bsdtb5_32530) rcrQ 3770750..3772603 (-) 1854 WP_271713045.1 ABC transporter ATP-binding protein Regulator
  bsdtb5_RS16365 (bsdtb5_32540) - 3772596..3774842 (-) 2247 WP_271713046.1 ABC transporter ATP-binding protein -
  bsdtb5_RS16370 (bsdtb5_32550) - 3774836..3775339 (-) 504 WP_271713047.1 MarR family winged helix-turn-helix transcriptional regulator -
  bsdtb5_RS16375 (bsdtb5_32560) - 3775782..3776201 (+) 420 WP_271713048.1 Fur family transcriptional regulator -
  bsdtb5_RS16380 (bsdtb5_32570) - 3776238..3776576 (-) 339 WP_271713049.1 hypothetical protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68370.07 Da        Isoelectric Point: 7.3296

>NTDB_id=83768 bsdtb5_RS16360 WP_271713045.1 3770750..3772603(-) (rcrQ) [Anaeromicropila herbilytica strain TB5]
MSNEVKRRNPRRGHGGPMGGGPMAPGEKAKDFKGSMKKLISYLGKYQIKIYLVILFAIGSTVFTIVGPKILGNATTEIFS
GMMKKISGKGGIDFDKIGHILFTLVILYIVSAIFGLIQGFIMTDVSQKVIYNLRKEISKKINRMPMKYFESKTNGEVLSR
VTNDVDTLSQSLNQSITQIITSITLIIGIIGMMLSINVFMTIVAMLVLPISGILIASVVKKSQKYFTEQQEYLGHVNGQI
EEIYGGHSVVTVFNGQEQVIDDFNKANDTLYNSAWKSQFLSGMMMPIMTFVGNLGYVAVAILGGYLAVKGKVKVGDIQSF
IQYVRQFNQPIGQLAQVANQLQSTAAAAERVFEFLNEEEEDQFAENPVATENIEGSVSFEHVHFGYNPDKVIINDFSANV
KPGQKVAIVGPTGAGKTTMIKLLMRFYDVNKGAIKIDGHDIKDFNRSELRELFGMVLQDTWLFNGSIRENIRYGKLEASD
EDVIKAAKAAHVDHFVRALPDGYNMELNEEASNISQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLM
KGRTSFIIAHRLSTIRDADLILVMKDGDIIEQGSHEELLAKGEFYANLYNSQFDKTA

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=83768 bsdtb5_RS16360 WP_271713045.1 3770750..3772603(-) (rcrQ) [Anaeromicropila herbilytica strain TB5]
ATGAGTAATGAAGTAAAAAGAAGAAATCCTAGAAGAGGTCATGGTGGACCTATGGGCGGCGGACCAATGGCGCCAGGTGA
AAAAGCAAAAGATTTTAAAGGTTCTATGAAGAAACTAATAAGCTATCTTGGAAAATATCAAATTAAAATATATTTAGTAA
TATTATTTGCAATTGGTAGTACCGTATTTACGATAGTTGGACCTAAAATCTTGGGTAATGCTACAACAGAAATATTTAGT
GGTATGATGAAGAAGATTTCAGGCAAGGGTGGTATTGATTTTGATAAAATCGGTCATATCTTATTTACCTTGGTAATCTT
ATATATAGTAAGTGCAATCTTTGGATTAATTCAAGGATTTATCATGACAGATGTATCGCAAAAGGTTATCTATAATCTTC
GTAAAGAGATCTCTAAGAAGATTAATCGTATGCCAATGAAATACTTTGAATCAAAGACAAATGGTGAAGTATTATCAAGA
GTAACCAATGATGTGGATACCCTAAGTCAAAGTTTAAATCAAAGTATCACTCAGATTATTACATCAATAACCTTAATCAT
TGGTATTATAGGTATGATGTTATCAATCAATGTATTTATGACGATTGTAGCAATGTTAGTGTTACCTATATCAGGTATTC
TCATTGCATCAGTAGTAAAGAAATCACAGAAATACTTTACAGAGCAACAAGAGTATCTTGGTCATGTAAATGGTCAGATA
GAAGAAATCTATGGTGGACATAGCGTAGTTACTGTATTCAATGGCCAAGAACAAGTAATTGATGATTTTAACAAAGCAAA
TGATACTTTATATAATTCAGCTTGGAAATCACAATTCCTATCTGGTATGATGATGCCTATTATGACATTTGTAGGTAACC
TCGGTTATGTTGCAGTTGCAATCTTAGGTGGATATTTAGCAGTAAAGGGAAAAGTAAAAGTTGGTGATATCCAATCCTTT
ATTCAATACGTAAGACAATTTAACCAACCAATCGGACAATTAGCGCAAGTAGCCAACCAACTTCAATCAACAGCTGCGGC
AGCAGAAAGAGTCTTTGAATTCTTAAATGAAGAAGAGGAAGACCAATTCGCAGAGAATCCAGTTGCTACAGAAAATATTG
AAGGAAGCGTAAGCTTTGAACATGTACATTTTGGCTATAACCCAGATAAAGTCATCATCAATGACTTTAGCGCAAATGTA
AAACCTGGCCAAAAGGTAGCAATCGTAGGACCAACAGGTGCAGGTAAAACAACAATGATAAAATTGTTAATGAGATTCTA
TGATGTAAATAAAGGTGCCATAAAGATTGATGGCCATGATATCAAAGATTTTAATCGTAGTGAATTAAGAGAACTATTTG
GAATGGTATTACAAGATACTTGGTTATTTAATGGTTCAATTAGAGAAAATATCCGCTATGGAAAACTAGAAGCAAGTGAT
GAAGATGTAATAAAAGCTGCAAAAGCAGCCCATGTAGACCACTTCGTAAGAGCATTACCAGATGGTTATAATATGGAATT
AAATGAAGAAGCATCAAATATCTCACAAGGACAAAAACAATTATTAACCATAGCACGTGCCATCCTAGCAGATCCAAAAA
TTCTAATACTAGATGAAGCAACAAGCTCCGTAGATACCAGAACTGAGGTATTAATCCAAAAAGCAATGGATAACCTTATG
AAGGGTAGAACTAGCTTTATTATCGCTCATAGATTATCAACTATAAGAGATGCAGATCTAATCTTAGTAATGAAAGATGG
AGATATCATCGAGCAAGGTAGCCATGAAGAATTGTTGGCTAAGGGCGAGTTTTATGCTAATTTGTATAATTCACAATTTG
ATAAAACAGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(52-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7R7IFB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.807

94.165

0.488

Multiple sequence alignment