Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QN090_RS14015 Genome accession   NZ_CP126329
Coordinates   2860206..2860820 (-) Length   204 a.a.
NCBI ID   WP_047501141.1    Uniprot ID   A0A5A9DFT6
Organism   Citrobacter braakii strain THB2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2855206..2865820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN090_RS14000 (QN090_14000) helD 2855430..2857484 (-) 2055 WP_047359367.1 DNA helicase IV -
  QN090_RS14005 (QN090_14005) - 2857610..2858056 (+) 447 WP_016152485.1 YccF domain-containing protein -
  QN090_RS14010 (QN090_14010) yccS 2858075..2860228 (+) 2154 WP_137367148.1 YccS family putative transporter -
  QN090_RS14015 (QN090_14015) sxy/tfoX 2860206..2860820 (-) 615 WP_047501141.1 TfoX/Sxy family DNA transformation protein Regulator
  QN090_RS14020 (QN090_14020) sulA 2861038..2861547 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  QN090_RS14025 (QN090_14025) ompA 2861905..2862963 (+) 1059 WP_016156137.1 porin OmpA -
  QN090_RS14030 (QN090_14030) matP 2863062..2863514 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  QN090_RS14035 (QN090_14035) - 2863700..2865460 (+) 1761 WP_016156136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23198.55 Da        Isoelectric Point: 8.6113

>NTDB_id=837648 QN090_RS14015 WP_047501141.1 2860206..2860820(-) (sxy/tfoX) [Citrobacter braakii strain THB2]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=837648 QN090_RS14015 WP_047501141.1 2860206..2860820(-) (sxy/tfoX) [Citrobacter braakii strain THB2]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAACGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9DFT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.652

98.529

0.686