Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QMM94_RS03540 Genome accession   NZ_AP027134
Coordinates   749931..751013 (+) Length   360 a.a.
NCBI ID   WP_154283866.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP008     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 744931..756013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM94_RS03520 (JP008_06720) - 745309..746379 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  QMM94_RS03525 (JP008_06730) - 746697..747752 (+) 1056 WP_000258150.1 MraY family glycosyltransferase -
  QMM94_RS03530 (JP008_06740) - 747916..748557 (-) 642 WP_154283867.1 YigZ family protein -
  QMM94_RS03535 (JP008_06750) fakB1 748701..749567 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  QMM94_RS03540 (JP008_06760) comFA 749931..751013 (+) 1083 WP_154283866.1 DEAD/DEAH box helicase Machinery gene
  QMM94_RS03545 (JP008_06770) - 751006..751680 (+) 675 WP_111204808.1 ComF family protein -
  QMM94_RS03550 (JP008_06780) raiA 751741..752313 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  QMM94_RS03555 (JP008_06790) secA 752728..755259 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  QMM94_RS03560 - 755301..755399 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41976.50 Da        Isoelectric Point: 9.7563

>NTDB_id=83760 QMM94_RS03540 WP_154283866.1 749931..751013(+) (comFA) [Staphylococcus aureus strain JP008]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMLQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENVIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=83760 QMM94_RS03540 WP_154283866.1 749931..751013(+) (comFA) [Staphylococcus aureus strain JP008]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCCTATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGCTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATGTAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTCAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTTGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCGCATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(214-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367

Multiple sequence alignment