Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QMM94_RS03455 Genome accession   NZ_AP027134
Coordinates   733355..734326 (+) Length   323 a.a.
NCBI ID   WP_154283873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP008     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 728355..739326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM94_RS03440 (JP008_06550) nrdI 729428..729826 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  QMM94_RS03445 (JP008_06560) nrdE 729789..731894 (+) 2106 WP_154283874.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  QMM94_RS03450 (JP008_06570) nrdF 732014..732985 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  QMM94_RS03455 (JP008_06590) ceuB 733355..734326 (+) 972 WP_154283873.1 ABC transporter permease Machinery gene
  QMM94_RS03460 (JP008_06600) - 734313..735269 (+) 957 WP_001245585.1 iron chelate uptake ABC transporter family permease subunit -
  QMM94_RS03465 (JP008_06610) - 735266..736027 (+) 762 WP_154283872.1 ABC transporter ATP-binding protein -
  QMM94_RS03470 (JP008_06620) - 736146..737174 (+) 1029 WP_154283871.1 siderophore ABC transporter substrate-binding protein -
  QMM94_RS03475 (JP008_06630) - 737491..737805 (-) 315 WP_001127269.1 CHY zinc finger protein -
  QMM94_RS03480 (JP008_06640) murB 737823..738746 (-) 924 WP_281961995.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35544.01 Da        Isoelectric Point: 10.1963

>NTDB_id=83759 QMM94_RS03455 WP_154283873.1 733355..734326(+) (ceuB) [Staphylococcus aureus strain JP008]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTVIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=83759 QMM94_RS03455 WP_154283873.1 733355..734326(+) (ceuB) [Staphylococcus aureus strain JP008]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACAA
TGAGTATTTTAATTGCTGGTAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTTGCTAGTTTTACAACGTTTATCTCATTACGT
ACGAATGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATCTTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
TATTCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCTTATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAGTCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474

Multiple sequence alignment