Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U8327_RS19630 Genome accession   NZ_CP141765
Coordinates   4128429..4129058 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain HYM1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4123429..4134058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8327_RS19610 (U8327_19610) ycbZ 4123831..4125591 (-) 1761 WP_000156479.1 AAA family ATPase -
  U8327_RS19615 (U8327_19615) matP 4125777..4126229 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  U8327_RS19620 (U8327_19620) ompA 4126305..4127345 (-) 1041 WP_001314606.1 porin OmpA -
  U8327_RS19625 (U8327_19625) sulA 4127701..4128210 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  U8327_RS19630 (U8327_19630) sxy/tfoX 4128429..4129058 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U8327_RS19635 (U8327_19635) yccS 4129021..4131183 (-) 2163 WP_000875041.1 YccS family putative transporter -
  U8327_RS19640 (U8327_19640) yccF 4131193..4131639 (-) 447 WP_001261235.1 YccF domain-containing protein -
  U8327_RS19645 (U8327_19645) helD 4131762..4133816 (+) 2055 WP_001314607.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=837587 U8327_RS19630 WP_000839153.1 4128429..4129058(+) (sxy/tfoX) [Escherichia coli strain HYM1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=837587 U8327_RS19630 WP_000839153.1 4128429..4129058(+) (sxy/tfoX) [Escherichia coli strain HYM1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1