Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OH687_RS18410 Genome accession   NZ_CP126321
Coordinates   805079..806584 (+) Length   501 a.a.
NCBI ID   WP_059575657.1    Uniprot ID   -
Organism   Burkholderia anthina strain SO82     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 800079..811584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH687_RS18385 (OH687_04180) kdsD 801310..802293 (+) 984 WP_124862536.1 arabinose 5-phosphate isomerase KdsD -
  OH687_RS18390 (OH687_04185) - 802293..802829 (+) 537 WP_316376298.1 KdsC family phosphatase -
  OH687_RS18395 (OH687_04190) lptC 802833..803447 (+) 615 WP_059506659.1 LPS export ABC transporter periplasmic protein LptC -
  OH687_RS18400 (OH687_04195) lptA 803468..804133 (+) 666 WP_006483139.1 lipopolysaccharide transport periplasmic protein LptA -
  OH687_RS18405 (OH687_04200) lptB 804130..804906 (+) 777 WP_059575659.1 LPS export ABC transporter ATP-binding protein -
  OH687_RS18410 (OH687_04205) rpoN/rpoN1 805079..806584 (+) 1506 WP_059575657.1 RNA polymerase factor sigma-54 Machinery gene
  OH687_RS18415 (OH687_04210) hpf 806744..807103 (+) 360 WP_006477786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OH687_RS18420 (OH687_04215) - 807298..807810 (+) 513 WP_179231743.1 PTS sugar transporter subunit IIA -
  OH687_RS18425 (OH687_04220) hprK 807940..808908 (+) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  OH687_RS18430 (OH687_04225) rapZ 808983..809891 (+) 909 WP_059642620.1 RNase adapter RapZ -
  OH687_RS18435 (OH687_04230) - 809919..810554 (+) 636 WP_011546241.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54726.86 Da        Isoelectric Point: 4.8740

>NTDB_id=837577 OH687_RS18410 WP_059575657.1 805079..806584(+) (rpoN/rpoN1) [Burkholderia anthina strain SO82]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVAADGSLIAQTPPASNTEPAA
ANGTSTSSDRAERDEPAGADEYDGYASGDGNDGPQWNLDEYGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQAGP
RDRALVMFLIESLDDDGYLTATLDEVLADLPPELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKATDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVVP
RLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=837577 OH687_RS18410 WP_059575657.1 805079..806584(+) (rpoN/rpoN1) [Burkholderia anthina strain SO82]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACATCTTGCGCTGACGCCCCAGCTGCAGCAGTCGATCCGGCTCCTGCA
GTTGTCGACGCTCGAATTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAACCCGCTGCTCGAGAACGACGACGAATGGA
TCGCGAGCCCGCTGCGCGTCGCCGCGGACGGATCGCTGATCGCGCAGACGCCACCCGCATCGAACACCGAACCCGCCGCG
GCCAACGGCACCAGTACGTCCAGCGATCGCGCGGAACGCGACGAGCCGGCAGGCGCCGACGAATACGATGGCTATGCGTC
CGGCGACGGCAACGACGGCCCGCAGTGGAATCTCGATGAATACGGCCGCTCGAGCGGCGCGTCCGACGACGACGATCTGC
CGCCGCTGCAGGTGCAGGAAGCCGCGACGTCGCTGCGCGACCACCTGTCCGCGCAGTTGCGCGTCACGCAGGCCGGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTATCTGACCGCCACGCTCGACGAAGTGCT
CGCCGATCTGCCGCCCGAGCTGGAAATCGACTGCGACGAACTGAACGCGGCGCTCGCGCTGCTGCACAGCTTCGACCCGG
CCGGCGTCGGCGCGCGCTCGGCCTCCGAATGCCTGAAGCTGCAGTTGCTGCGTCTCGATCCGTCCCCCACGCGCACGCTC
GCGCTCGAGATCGTGTCGCAGCATCTCGAACTGCTCGCCGCGCGCGACTTCACACGGTTGCGCAAGCACCTGAAGGCGAC
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCCGCATACGGGAAGGCCGAGG
CCGACTACGTCGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGCTGGCTCGCGGAGCTCAATCCGGAGGTCGTGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATCCTGCGCAACAGCCGCGGCGACCCGTCGGCCGGATCGTTGAAACAGCA
GCTCCAGGAAGCGCGCTGGCTGATCAAGAACATCCAGCAGCGTTTCGACACGATCCTGCGTGTCGCGCAGGCTATTGTCG
AGCGTCAGAAGAATTTCTTCGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGGAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTT
CTTCGGATCTCACGTCTCGACCGACACCGGTGGCGCCGCCTCGTCGACCGCCATCCGAGCCCTCATCAAGCAACTGATAG
GAGCTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGTTTCGTGGTCGCGCGC
CGCACGGTTGCGAAATATCGCGAAGCCCTCAAGATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.379

100

0.691