Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   U8327_RS06845 Genome accession   NZ_CP141765
Coordinates   1404630..1405877 (+) Length   415 a.a.
NCBI ID   WP_001153642.1    Uniprot ID   -
Organism   Escherichia coli strain HYM1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1399630..1410877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8327_RS06830 (U8327_06830) - 1400145..1401821 (+) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -
  U8327_RS06835 (U8327_06835) kdsB 1401831..1402571 (+) 741 WP_063103263.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U8327_RS06840 (U8327_06840) - 1402568..1404595 (+) 2028 WP_324701129.1 capsular polysaccharide biosynthesis protein -
  U8327_RS06845 (U8327_06845) kpsS 1404630..1405877 (+) 1248 WP_001153642.1 capsule biosynthesis protein Regulator
  U8327_RS06850 (U8327_06850) - 1405986..1407578 (-) 1593 WP_063103265.1 WcbI family polysaccharide biosynthesis putative acetyltransferase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 49524.95 Da        Isoelectric Point: 9.9752

>NTDB_id=837537 U8327_RS06845 WP_001153642.1 1404630..1405877(+) (kpsS) [Escherichia coli strain HYM1]
MQDNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNAVYYGGVSIGEKNRY
ESDYSYYSKKPHHND

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=837537 U8327_RS06845 WP_001153642.1 1404630..1405877(+) (kpsS) [Escherichia coli strain HYM1]
ATGCAAGACAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGCTGCGAGATCTCCACCGACAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGACCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCGTGGTATGAAGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCAAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGTTGATTCATAATAAACCACTTAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTAACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGATGAAGACGCAGGTTAATGCGGTTTATTATGGGGGAGTAAGCATTGGAGAAAAAAATAGGTAT
GAAAGTGATTACTCCTATTATTCAAAGAAACCGCATCATAATGACTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

93.735

0.373