Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   VA249_RS16990 Genome accession   NZ_AP024166
Coordinates   559573..560754 (-) Length   393 a.a.
NCBI ID   WP_221071847.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain 04Ya108     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 554573..565754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA249_RS16975 (VYA_31830) - 554991..556115 (-) 1125 WP_221071843.1 acyl-CoA desaturase -
  VA249_RS16980 (VYA_31850) - 556386..556934 (+) 549 WP_128812810.1 GNAT family N-acetyltransferase -
  VA249_RS16985 (VYA_31860) - 557430..559475 (+) 2046 WP_221071845.1 hybrid sensor histidine kinase/response regulator -
  VA249_RS16990 (VYA_31870) cqsA 559573..560754 (-) 1182 WP_221071847.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VA249_RS16995 (VYA_31880) ylqF 561062..562006 (-) 945 WP_221071858.1 ribosome biogenesis GTPase YlqF -
  VA249_RS17000 (VYA_31890) - 562295..563014 (+) 720 WP_221071860.1 nitroreductase family protein -
  VA249_RS17005 (VYA_31900) - 563270..564250 (+) 981 WP_221071862.1 chemotaxis protein -
  VA249_RS17010 (VYA_31910) - 564305..564856 (-) 552 WP_221071864.1 type II secretion system protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43932.95 Da        Isoelectric Point: 6.1867

>NTDB_id=83752 VA249_RS16990 WP_221071847.1 559573..560754(-) (cqsA) [Vibrio alfacsensis strain 04Ya108]
MSQQLKSKPLPSFIEERLEFYFQDLIEPNTNQKHLVLGQRPQADAIVMQSNDYLSLSHNQDIQRAHRDAISSHDDNVVMS
AIFLQDETTKPAFEHQLAEYVGMESCLLSQSGWAANIGLLQTICAPNSPVYIDFFAHMSLWEGIRAAGAQAFPFMHNNMN
HLRKQVERHGPGVIVVDSVYSTIGTIAPLRDIYEMAQAYDCAVVVDESHSLGTHGPNGEGLVKALGLTEHVDFITVSLAK
TFAYRAGAILGPKKLAQTLPFVAYPAIFSSTVLPQEIVRLEKTLEVIKKSDDKRNQLFNHAKALTTGLKQIGFHIRSESQ
IVALECGNERNTERVRDFLEDNNVFGAVFCRPATGRNKNIIRFSLNADMTPQDIDHVLTVCQKAFDHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=83752 VA249_RS16990 WP_221071847.1 559573..560754(-) (cqsA) [Vibrio alfacsensis strain 04Ya108]
ATGAGTCAACAATTGAAATCGAAACCCCTTCCTTCCTTTATCGAGGAACGCCTAGAATTTTACTTTCAAGATTTAATCGA
ACCAAATACAAACCAGAAGCACTTGGTTTTAGGACAGCGACCTCAGGCTGACGCAATAGTCATGCAGAGTAATGACTACC
TGTCTCTATCTCATAACCAAGATATTCAGCGAGCGCATCGTGATGCCATTTCAAGCCATGATGACAATGTTGTTATGTCC
GCAATTTTCCTTCAAGACGAAACCACTAAACCCGCATTTGAACATCAACTTGCCGAGTATGTTGGTATGGAAAGTTGCCT
ACTTTCTCAATCAGGTTGGGCCGCAAATATTGGTTTGCTACAGACTATCTGCGCTCCTAACAGCCCAGTCTATATTGATT
TTTTTGCTCATATGTCTTTATGGGAAGGTATCCGAGCTGCAGGCGCACAAGCCTTTCCTTTCATGCATAACAATATGAAC
CACTTACGCAAGCAAGTTGAGCGCCATGGACCGGGCGTCATTGTTGTCGACTCGGTATACAGCACAATAGGCACCATCGC
CCCTCTTCGCGACATCTACGAAATGGCGCAAGCGTACGATTGTGCAGTCGTTGTTGATGAATCGCATTCTTTAGGGACTC
ACGGGCCAAATGGGGAGGGATTGGTAAAAGCATTAGGGCTGACAGAGCACGTGGATTTCATTACTGTCAGTTTAGCGAAG
ACATTTGCTTATCGCGCCGGAGCGATCCTCGGGCCAAAAAAGTTGGCACAAACACTCCCTTTTGTCGCATACCCAGCAAT
ATTCAGTTCAACTGTACTTCCTCAAGAAATCGTACGTCTTGAGAAAACTCTCGAAGTTATTAAAAAATCTGACGATAAAC
GAAATCAATTGTTTAACCATGCTAAAGCACTTACGACAGGCTTAAAGCAGATAGGTTTTCATATTCGTAGTGAATCCCAG
ATAGTTGCGTTGGAATGTGGTAATGAACGAAATACAGAGCGTGTTCGAGATTTTCTTGAAGATAATAACGTATTTGGAGC
AGTATTCTGCAGACCAGCCACGGGGCGTAATAAAAATATTATCCGTTTTTCACTGAATGCAGACATGACTCCACAAGATA
TTGATCATGTTCTAACGGTGTGTCAAAAAGCATTTGATCATCCAGAACTCGAATTCGTTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547

Multiple sequence alignment