Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PaeBR_RS09330 Genome accession   NZ_CP126311
Coordinates   1982928..1983365 (-) Length   145 a.a.
NCBI ID   WP_410514548.1    Uniprot ID   -
Organism   Paenibacillus sp. BR2-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1977928..1988365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PaeBR_RS09290 (PaeBR_09225) pyrF 1978997..1979776 (+) 780 WP_410514543.1 orotidine-5'-phosphate decarboxylase -
  PaeBR_RS09295 (PaeBR_09230) pyrE 1979773..1980414 (+) 642 WP_410514544.1 orotate phosphoribosyltransferase -
  PaeBR_RS09300 (PaeBR_09235) - 1980615..1980779 (+) 165 WP_019909365.1 hypothetical protein -
  PaeBR_RS09315 (PaeBR_09250) - 1981256..1981939 (+) 684 WP_410514545.1 copper amine oxidase N-terminal domain-containing protein -
  PaeBR_RS09320 (PaeBR_09255) - 1981981..1982511 (-) 531 WP_410514546.1 ImmA/IrrE family metallo-endopeptidase -
  PaeBR_RS09325 (PaeBR_09260) - 1982684..1982836 (+) 153 WP_410514547.1 hypothetical protein -
  PaeBR_RS09330 (PaeBR_09265) nucA/comI 1982928..1983365 (-) 438 WP_410514548.1 DNA-entry nuclease Machinery gene
  PaeBR_RS09335 (PaeBR_09270) - 1983514..1983816 (+) 303 WP_410514549.1 erythromycin esterase family protein -
  PaeBR_RS09340 (PaeBR_09275) - 1983949..1985175 (-) 1227 WP_410514550.1 IS701 family transposase -
  PaeBR_RS09345 (PaeBR_09280) - 1985396..1985959 (+) 564 WP_410514551.1 hypothetical protein -
  PaeBR_RS09350 (PaeBR_09285) - 1986285..1987247 (-) 963 WP_410514552.1 glycosyltransferase -
  PaeBR_RS09355 (PaeBR_09290) - 1987189..1987788 (-) 600 WP_410514553.1 PIG-L family deacetylase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16230.32 Da        Isoelectric Point: 4.6286

>NTDB_id=837502 PaeBR_RS09330 WP_410514548.1 1982928..1983365(-) (nucA/comI) [Paenibacillus sp. BR2-3]
MKARKKLISLIILLLFSIIVYKYGEDRLSNEPSVPSNEEAIKLVFPSDRYPETARHIQDAIASGEQPVCTIDREGADENR
SLSLKGVPTKKGYDRDEWPMAMCREGGEGADIEYIAPSDNRGAGSWVGNQLEDFADGTRVEFMFK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=837502 PaeBR_RS09330 WP_410514548.1 1982928..1983365(-) (nucA/comI) [Paenibacillus sp. BR2-3]
GTGAAAGCACGAAAAAAATTAATAAGTCTCATTATTCTCCTGTTATTTTCCATTATCGTTTATAAGTACGGAGAAGATAG
ACTGAGCAACGAGCCCTCAGTTCCATCAAATGAAGAGGCTATAAAGCTTGTCTTTCCTTCGGACCGCTATCCGGAGACTG
CCAGACATATTCAGGACGCTATCGCAAGCGGAGAGCAGCCGGTCTGCACCATTGACCGGGAGGGTGCTGATGAGAACCGC
AGTCTATCCTTGAAAGGGGTGCCTACCAAAAAGGGCTATGACCGGGACGAGTGGCCCATGGCCATGTGCCGGGAAGGCGG
AGAAGGCGCTGACATCGAATACATAGCGCCAAGCGATAATCGTGGTGCCGGAAGCTGGGTCGGCAATCAATTGGAGGATT
TTGCTGACGGTACGCGCGTAGAATTTATGTTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.903

71.034

0.497