Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QN061_RS14015 Genome accession   NZ_CP126305
Coordinates   2985119..2986855 (-) Length   578 a.a.
NCBI ID   WP_038127863.1    Uniprot ID   -
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2980119..2991855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS13995 (QN061_13995) - 2980821..2981651 (-) 831 WP_020329450.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  QN061_RS14000 (QN061_14000) - 2981746..2983254 (-) 1509 WP_020329449.1 AAA family ATPase -
  QN061_RS14005 (QN061_14005) aroB 2983300..2984385 (-) 1086 WP_020329448.1 3-dehydroquinate synthase -
  QN061_RS14010 (QN061_14010) aroK 2984413..2984931 (-) 519 WP_004728569.1 shikimate kinase AroK -
  QN061_RS14015 (QN061_14015) pilQ 2985119..2986855 (-) 1737 WP_038127863.1 type IV pilus secretin PilQ family protein Machinery gene
  QN061_RS14020 (QN061_14020) pilP 2986880..2987392 (-) 513 WP_020329446.1 pilus assembly protein PilP Machinery gene
  QN061_RS14025 (QN061_14025) pilO 2987382..2987972 (-) 591 WP_020329445.1 type 4a pilus biogenesis protein PilO Machinery gene
  QN061_RS14030 (QN061_14030) pilN 2987965..2988555 (-) 591 WP_020329444.1 PilN domain-containing protein Machinery gene
  QN061_RS14035 (QN061_14035) pilM 2988545..2989549 (-) 1005 WP_222741034.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62466.42 Da        Isoelectric Point: 4.5373

>NTDB_id=837437 QN061_RS14015 WP_038127863.1 2985119..2986855(-) (pilQ) [Vibrio fluvialis strain SD21SC3889PM]
MIKGLNASTAWGIRCLFVGVCLLLSAATLAQEAAANQLKNIDFRINKDKAAVLIVELASASAVVDVQKTEQGLNIELLKT
DVSDDRLYLLDVRDFATAVENIEVFRQQPSTLLVATVQGEFNYDYSLKGNYLEVVIRKLKAEEKAKPKSVLEKEGKLISI
NFQDIPVRNVLQLIADYNEFNLVVSDSVRGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDLREKQQLE
KARMAEELGDLQSDILIINFAKASDIAQMIGGDGAVNMLSERGSISIDERTNALLIRELPENIAVIRDIVASLDIPVKQV
QIEARIVTVNEGNLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGGNNSGGSGDGVAIDDFLNVNLAATSANASSIA
FQVAKLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPD
NRLVLDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPVLGALFRRSYE
QMGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=837437 QN061_RS14015 WP_038127863.1 2985119..2986855(-) (pilQ) [Vibrio fluvialis strain SD21SC3889PM]
ATGATTAAAGGACTAAATGCCTCCACGGCGTGGGGAATACGTTGTCTGTTTGTGGGCGTATGCCTGCTGTTATCTGCCGC
CACACTTGCTCAGGAAGCGGCGGCCAATCAGCTGAAAAATATCGATTTTCGTATCAACAAAGACAAAGCGGCGGTACTGA
TTGTCGAACTGGCTTCCGCCTCGGCCGTGGTGGATGTGCAGAAAACCGAGCAAGGCCTGAATATCGAACTGCTGAAAACC
GATGTCAGCGACGACAGACTCTACCTGCTCGATGTGCGCGACTTTGCCACCGCAGTGGAAAACATCGAAGTGTTCCGCCA
GCAGCCCAGCACCTTGTTGGTCGCAACGGTGCAGGGGGAGTTCAATTATGATTACAGTCTGAAGGGTAACTATCTGGAGG
TGGTGATCCGCAAGTTAAAAGCCGAGGAGAAAGCCAAACCCAAAAGCGTATTAGAAAAAGAAGGCAAGCTGATTTCGATT
AACTTTCAGGATATTCCGGTGCGCAATGTGCTTCAGTTGATCGCAGACTACAATGAGTTCAATCTGGTGGTTTCCGATTC
AGTGCGCGGCAACCTGACGCTGCGCCTTGATGGCGTGCCCTGGCAGCAGGTGCTGGACATTATTCTGCAAGTCAAAGGTC
TGGATAAGCGCGTCGACGGCAATGTGATTCTGGTGGCGCCCAAAGAAGAGCTGGATCTGCGTGAAAAGCAGCAGTTGGAA
AAAGCCCGCATGGCGGAAGAACTCGGCGATCTGCAATCGGATATTCTCATCATCAACTTTGCCAAAGCGTCTGACATTGC
GCAGATGATTGGCGGCGATGGAGCGGTCAATATGTTGTCGGAGCGTGGCTCGATCAGCATTGATGAACGTACCAATGCGC
TGCTGATTCGTGAACTGCCGGAGAACATTGCTGTGATTCGCGATATCGTGGCGTCGCTCGATATTCCGGTCAAGCAAGTA
CAGATTGAAGCGCGTATTGTGACGGTCAATGAAGGTAACTTGGATGAACTGGGTGTGCGCTGGGGTTTTAGCTCCACCAA
TGGCAGCACGACCACGGGTGGCTCGATTGAAAGCAATCTGGGGGCAATTGGTTTGTACGATGGCGGTAATAATAGTGGCG
GTTCTGGTGATGGCGTTGCGATTGATGATTTCCTCAATGTTAACCTCGCAGCCACCTCAGCCAATGCGTCCAGCATTGCG
TTTCAGGTCGCCAAGCTCGGCGCCGATACCTTGCTCGATCTTGAACTGTCAGCCATGCAACGCGAGTCAAAAGCGGAAAT
CATCTCCAGTCCGAGACTGATCACCACCAACAAGCAGCCGGCGTATATTGAACAGGGTACTGAGATTCCGTATCTGGAAT
CCTCATCCAGTGGCGCCACCAGTGTGGCATTCAAGAAGGCAGTACTCAGCCTCAAAGTGACGCCACAAATCACCCCCGAT
AACCGTCTGGTGCTGGATTTGAGCGTCACTCAGGATCGGCCGGGTGAAGTGGTGAAAACCGGCACTGGCGAGGCGGTGGC
GATCAACACGCAACGTATTGGTACACAGGTGCTGGTCAACAACGGTGAAACCGTGGTTCTGGGCGGCATTTTCCAGCACA
GTATTACGAATTCAGTCGACAAGGTGCCGCTGCTGGGTGACTTGCCCGTGTTAGGCGCGCTGTTCCGTCGCAGCTACGAA
CAAATGGGCAAAAGTGAGCTGCTGATCTTTGTAACACCGAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(258-319)

Secretin and TonB N terminus short domain (STN)

(180-228)

Bacterial type II and III secretion system protein (Secretin)

(418-576)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

81.52

100

0.817
  pilQ Vibrio cholerae strain A1552

81.52

100

0.817
  pilQ Vibrio campbellii strain DS40M4

79.235

94.983

0.753
  pilQ Legionella pneumophila strain ERS1305867

42.364

95.156

0.403
  pilQ Legionella pneumophila strain Lp02

42.364

95.156

0.403
  pilQ Pseudomonas aeruginosa PAK

40.721

96.021

0.391
  comQ Acinetobacter baylyi ADP1

37.973

100

0.382